[med-svn] [Git][med-team/fastqtl][master] 20 commits: Package enhanced version of fastqtl

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / fastqtl


Commits:
d363c3e2 by Andreas Tille at 2022-10-05T10:31:43+02:00
Package enhanced version of fastqtl

- - - - -
1fb0a51c by Andreas Tille at 2022-10-05T10:32:03+02:00
New upstream version 2.184v7
- - - - -
9460bf9f by Andreas Tille at 2022-10-05T10:32:09+02:00
Update upstream source from tag 'upstream/2.184v7'

Update to upstream version '2.184v7'
with Debian dir 6efecbe3183725f4036b8a44f18be7505e2250f7
- - - - -
66f10d29 by Andreas Tille at 2022-10-05T10:34:35+02:00
Fix watch file

- - - - -
3e35be48 by Andreas Tille at 2022-10-05T10:34:59+02:00
Adapt changelog

- - - - -
c167c148 by Andreas Tille at 2022-10-05T11:06:22+02:00
Adapt to new upstream features

- - - - -
d22280f6 by Andreas Tille at 2022-10-05T11:06:48+02:00
routine-update: Standards-Version: 4.6.1

- - - - -
3c37c790 by Andreas Tille at 2022-10-05T11:06:53+02:00
routine-update: Add salsa-ci file

- - - - -
d6c12a69 by Andreas Tille at 2022-10-05T11:06:54+02:00
Add missing ${misc:Depends} to Depends for fastqtl.

Changes-By: lintian-brush
Fixes: lintian: debhelper-but-no-misc-depends
See-also: https://lintian.debian.org/tags/debhelper-but-no-misc-depends.html

- - - - -
7544ec5f by Andreas Tille at 2022-10-05T11:07:08+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse..

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html

- - - - -
3ebe9f3e by Andreas Tille at 2022-10-05T11:10:23+02:00
Add missing repacksuffix

- - - - -
6c34ffd0 by Andreas Tille at 2022-10-05T11:10:55+02:00
New upstream version 2.184v7+dfsg
- - - - -
f0b04b97 by Andreas Tille at 2022-10-05T11:11:01+02:00
Update upstream source from tag 'upstream/2.184v7+dfsg'

Update to upstream version '2.184v7+dfsg'
with Debian dir a1e463c7d412e2ce5d4fc7225584468785f8e432
- - - - -
521b2fb7 by Andreas Tille at 2022-10-05T11:15:16+02:00
DEP3

- - - - -
4a3b44b7 by Andreas Tille at 2022-10-05T11:15:39+02:00
Fix typo

- - - - -
8899b4de by Andreas Tille at 2022-10-05T11:19:28+02:00
Fix lintian-overrides

- - - - -
7ada77ae by Andreas Tille at 2022-10-05T11:20:29+02:00
Fix permissions

- - - - -
f71b3c33 by Andreas Tille at 2022-10-05T11:21:29+02:00
ignore false positive

- - - - -
2fdae550 by Andreas Tille at 2022-10-05T11:40:44+02:00
add dh-python

- - - - -
8c36778c by Andreas Tille at 2022-10-05T11:43:58+02:00
Upload to unstable

- - - - -


30 changed files:

- Makefile
- + R/calculateSignificanceFastQTL.R
- − README
- + README.md
- + debian/README.source
- debian/changelog
- debian/control
- debian/copyright
- debian/fastqtl-doc.install
- debian/fastqtl.install
- debian/fastqtl.lintian-overrides
- debian/patches/01_Makefile_dynamic_hardenings.patch
- debian/patches/series
- + debian/patches/set_path.patch
- debian/rules
- + debian/salsa-ci.yml
- + debian/source/lintian-overrides
- debian/upstream/metadata
- debian/watch
- + python/annotate_outputs.py
- + python/merge_chunks.py
- + python/run_FastQTL_threaded.py
- + python/run_chunk.py
- + python/sort_index_pairs.py
- − script/calulateNominalPvalueThresholds.R
- src/analysisNominal.cpp
- + src/analysisNominalBest.cpp
- src/analysisPermutation.cpp
- src/data.h
- src/fastQTL.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/fastqtl/-/compare/b31bcccdffe5c7dbf9fccabfb4583b0b83ac91b8...8c36778c14e9810b63152bdb4294f85f5f7f4053

-- 
View it on GitLab: https://salsa.debian.org/med-team/fastqtl/-/compare/b31bcccdffe5c7dbf9fccabfb4583b0b83ac91b8...8c36778c14e9810b63152bdb4294f85f5f7f4053
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20221005/8a65f0a9/attachment-0001.htm>