[med-svn] [Git][med-team/pbbam][master] 9 commits: New upstream version 2.3.0+dfsg

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / pbbam


Commits:
0f2ddb12 by Michael R. Crusoe at 2023-08-13T14:05:55+02:00
New upstream version 2.3.0+dfsg
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72483786 by Michael R. Crusoe at 2023-08-13T14:05:55+02:00
routine-update: New upstream version

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5bb67adb by Michael R. Crusoe at 2023-08-13T14:05:59+02:00
Update upstream source from tag 'upstream/2.3.0+dfsg'

Update to upstream version '2.3.0+dfsg'
with Debian dir 23974cc3484d338de8b0660deee4e28ddb7ee308
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04f706d0 by Michael R. Crusoe at 2023-08-13T14:05:59+02:00
routine-update: Standards-Version: 4.6.2

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fdb32de8 by Michael R. Crusoe at 2023-08-13T14:07:34+02:00
refreshed patches

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edf0d93c by Michael R. Crusoe at 2023-08-13T14:21:31+02:00
d/control: use ${devlibs:Depends} on the -dev package

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170ba279 by Michael R. Crusoe at 2023-08-13T14:25:53+02:00
d/patches/spelling: fix a typo

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6abfaf8b by Michael R. Crusoe at 2023-08-13T17:26:14+02:00
d/control: build-dep on the newer pbcopper (2.2.0)

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4f08bf75 by Michael R. Crusoe at 2023-08-13T17:27:49+02:00
routine-update: Ready to upload to unstable

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30 changed files:

- CHANGELOG.md
- debian/changelog
- debian/control
- debian/patches/series
- + debian/patches/spelling
- debian/patches/use_debian_packaged_python3-cram.patch
- debian/rules
- include/meson.build
- − include/pbbam/Accuracy.h
- include/pbbam/BaiIndexedBamReader.h
- include/pbbam/BamRecord.h
- include/pbbam/BamRecordImpl.h
- include/pbbam/BamRecordView.h
- − include/pbbam/Cigar.h
- − include/pbbam/CigarOperation.h
- include/pbbam/CompositeBamReader.h
- include/pbbam/DataSet.h
- include/pbbam/FastqSequence.h
- − include/pbbam/Frames.h
- − include/pbbam/GenomicInterval.h
- include/pbbam/IndexedFastaReader.h
- include/pbbam/IndexedFastqReader.h
- − include/pbbam/Interval.h
- − include/pbbam/LocalContextFlags.h
- − include/pbbam/Orientation.h
- include/pbbam/PbiFilterTypes.h
- − include/pbbam/Position.h
- − include/pbbam/QualityValue.h
- − include/pbbam/QualityValues.h
- include/pbbam/ReadGroupInfo.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pbbam/-/compare/b13ce37550e541469cc1eee5cb73fb46f3ad9e3f...4f08bf75594fc7186e94f9f9bfe38c73a0558c1e

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View it on GitLab: https://salsa.debian.org/med-team/pbbam/-/compare/b13ce37550e541469cc1eee5cb73fb46f3ad9e3f...4f08bf75594fc7186e94f9f9bfe38c73a0558c1e
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