[med-svn] [Git][med-team/stacks][master] 10 commits: routine-update: New upstream version

[Lance Lin (@linqigang)]

Lance Lin pushed to branch master at Debian Med / stacks


Commits:
2ceee63e by Lance Lin at 2023-08-29T20:52:47+07:00
routine-update: New upstream version

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eaf87a65 by Lance Lin at 2023-08-29T20:52:57+07:00
New upstream version 2.65+dfsg
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0b2e20b4 by Lance Lin at 2023-08-29T20:52:58+07:00
Update upstream source from tag 'upstream/2.65+dfsg'

Update to upstream version '2.65+dfsg'
with Debian dir 47d565ff945cfc044136a488a2eae0a6f63d51fd
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e8e7211e by Lance Lin at 2023-08-29T20:52:58+07:00
routine-update: Standards-Version: 4.6.2

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1fe94195 by Lance Lin at 2023-08-29T20:53:01+07:00
routine-update: Ready to upload to unstable

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17046650 by Lance Lin at 2023-08-29T22:51:11+07:00
Update copyright

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4a2ad033 by Lance Lin at 2023-08-29T23:00:16+07:00
Update executables path to be libexec instead of lib

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3c8f70ea by Lance Lin at 2023-08-29T23:00:36+07:00
Add patch description

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e44e7db3 by Lance Lin at 2023-08-29T23:01:12+07:00
Add patch for spelling errors

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b0e2f316 by Lance Lin at 2023-08-29T23:01:54+07:00
Update changelog

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30 changed files:

- ChangeLog
- configure.ac
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/RisR.patch
- + debian/patches/fix_spelling_errors.patch
- debian/patches/script-exe-paths
- debian/patches/series
- debian/rules
- scripts/denovo_map.pl
- scripts/stacks-integrate-alignments
- src/PopSum.cc
- src/PopSum.h
- src/Seq.h
- src/Vcf.cc
- src/Vcf.h
- src/clean.h
- src/constants.h
- src/cstacks.cc
- src/cstacks.h
- src/export_formats.cc
- src/populations.cc
- src/populations.h
- src/process_radtags.cc
- src/renz.cc
- src/sql_utilities.cc
- src/sql_utilities.h
- src/sstacks.cc
- src/tsv2bam.cc


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/stacks/-/compare/3a737b16f64920e7f9c47ed9fa4fbd190a90231c...b0e2f3161b582f5029684fbc2e6d974b01d87e99

-- 
View it on GitLab: https://salsa.debian.org/med-team/stacks/-/compare/3a737b16f64920e7f9c47ed9fa4fbd190a90231c...b0e2f3161b582f5029684fbc2e6d974b01d87e99
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