[med-svn] [Git][med-team/sra-sdk][upstream] New upstream version 3.0.9+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / sra-sdk


Commits:
7e3e1143 by Andreas Tille at 2023-12-09T18:49:53+01:00
New upstream version 3.0.9+dfsg
- - - - -


30 changed files:

- CHANGES.md
- README.md
- build/Makefile.env
- build/Makefile.vers
- build/docker/Dockerfile.build-alpine
- build/docker/Makefile
- build/docker/README.md
- + build/docker/find-parts.pl
- build/env.cmake
- libs/ascp/CMakeLists.txt
- libs/ascp/linux/ascp-path.c
- libs/ascp/unix/connect.c
- libs/diagnose/diagnose.c
- libs/general-writer/general-writer.cpp
- libs/general-writer/gw-dumper.cpp
- tools/loaders/sharq/bm/bmbmi2.h → libs/inc/bm/LICENSE
- tools/loaders/bam-loader/bm/bm.h → libs/inc/bm/bm.h
- tools/loaders/bam-loader/bm/bm3vl.h → libs/inc/bm/bm3vl.h
- tools/loaders/bam-loader/bm/bm64.h → libs/inc/bm/bm64.h
- tools/loaders/bam-loader/bm/bmaggregator.h → libs/inc/bm/bmaggregator.h
- tools/loaders/bam-loader/bm/bmalgo.h → libs/inc/bm/bmalgo.h
- tools/loaders/bam-loader/bm/bmalgo_impl.h → libs/inc/bm/bmalgo_impl.h
- tools/loaders/bam-loader/bm/bmalgo_similarity.h → libs/inc/bm/bmalgo_similarity.h
- tools/loaders/bam-loader/bm/bmalloc.h → libs/inc/bm/bmalloc.h
- tools/loaders/bam-loader/bm/bmavx2.h → libs/inc/bm/bmavx2.h
- tools/loaders/bam-loader/bm/bmavx512.h → libs/inc/bm/bmavx512.h
- tools/loaders/bam-loader/bm/bmblocks.h → libs/inc/bm/bmblocks.h
- tools/loaders/bam-loader/bm/bmbmatrix.h → libs/inc/bm/bmbmatrix.h
- tools/loaders/bam-loader/bm/bmbmi1.h → libs/inc/bm/bmbmi1.h
- tools/loaders/bam-loader/bm/bmbmi2.h → libs/inc/bm/bmbmi2.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/sra-sdk/-/commit/7e3e1143c7ad82ccf34381e7f01b6cf4dfc426e8

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View it on GitLab: https://salsa.debian.org/med-team/sra-sdk/-/commit/7e3e1143c7ad82ccf34381e7f01b6cf4dfc426e8
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