[med-svn] [Git][med-team/ugene][master] 13 commits: New upstream version 49.1+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / ugene


Commits:
2c27557f by Pierre Gruet at 2023-12-09T20:12:58+01:00
New upstream version 49.1+dfsg
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9925030d by Pierre Gruet at 2023-12-09T20:13:22+01:00
Update upstream source from tag 'upstream/49.1+dfsg'

Update to upstream version '49.1+dfsg'
with Debian dir 2826eb4e73e57408b00c2cb0db4fd8632818b6ff
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8c1148e6 by Pierre Gruet at 2023-12-12T14:40:18+01:00
Rewriting d/copyright

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3b53e6f7 by Pierre Gruet at 2023-12-12T14:41:20+01:00
Refreshing patches

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6b4a766b by Pierre Gruet at 2023-12-12T14:43:05+01:00
Updating install paths

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b21ae113 by Pierre Gruet at 2023-12-12T14:43:32+01:00
Fixing spelling mistakes

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0679b31a by Pierre Gruet at 2023-12-12T14:43:58+01:00
Using python3 instead of python in shebangs

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8fba5371 by Pierre Gruet at 2023-12-12T14:44:24+01:00
Setting the runpaths so that private shared libraries can be found

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5796d16b by Pierre Gruet at 2023-12-12T14:44:40+01:00
Fixing Lintian override syntax

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c0ba776a by Pierre Gruet at 2023-12-12T14:45:30+01:00
Overriding Lintian warnings due to false positives

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213ac0d1 by Pierre Gruet at 2023-12-12T14:47:46+01:00
Updating changelog

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428723ac by Pierre Gruet at 2023-12-12T14:49:37+01:00
Shipping to main instead of non-free

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1d32140b by Pierre Gruet at 2023-12-12T14:50:02+01:00
Upload to unstable

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24 changed files:

- .gitignore
- data/cmdline/align-kalign.uwl
- − data/cmdline/align-tcoffee.uwl
- data/cmdline/extract_consensus_sequence.uwl
- data/cmdline/remote-request.uwl
- − data/enzymes/2013_08_01.bairoch.gz
- + data/enzymes/2023_02_25.bairoch.gz
- + data/primer3/presets/Default.txt
- + data/primer3/presets/RPA.txt
- data/workflow_samples/Scenarios/filter_matched.uwl
- data/workflow_samples/Scenarios/find_inverted_repeats.uwl
- data/workflow_samples/Scenarios/find_sequences.uwl
- data/workflow_samples/Scenarios/gene_by_gene_report.uwl
- data/workflow_samples/Scenarios/group_primers_pairs.uwl
- data/workflow_samples/Scenarios/merge_sequence_annotation.uwl
- data/workflow_samples/Scenarios/pcr.uwl
- debian/changelog
- debian/control
- debian/copyright
- + debian/not-installed
- debian/patches/do_not_build_phylip.patch → debian/patches/do_not_build_phylip_and_psipred.patch
- + debian/patches/python_interpreter.patch
- debian/patches/series
- + debian/patches/set_rpath.patch


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ugene/-/compare/fc0d55f3af22ef183b27075116040ebe4bc9ec38...1d32140b407af4a6a0fb3e2a3fc7e8cb63a37b9d

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View it on GitLab: https://salsa.debian.org/med-team/ugene/-/compare/fc0d55f3af22ef183b27075116040ebe4bc9ec38...1d32140b407af4a6a0fb3e2a3fc7e8cb63a37b9d
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