[med-svn] [Git][med-team/bamtools][master] 4 commits: d/control: add myself to uploaders.

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / bamtools


Commits:
debb897c by Étienne Mollier at 2023-12-15T18:50:37+01:00
d/control: add myself to uploaders.

- - - - -
6a3ade9f by Étienne Mollier at 2023-12-15T18:58:07+01:00
d/rules: preserve pristine Doxyfile.

Closes: #1043881

- - - - -
cb79c20b by Étienne Mollier at 2023-12-15T19:07:00+01:00
typo.patch: new: fix typo caught by lintian.

- - - - -
46e2b618 by Étienne Mollier at 2023-12-15T19:13:10+01:00
ready to upload to unstable.

- - - - -


5 changed files:

- debian/changelog
- debian/control
- debian/patches/series
- + debian/patches/typo.patch
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+bamtools (2.5.2+dfsg-5) unstable; urgency=medium
+
+  * d/control: add myself to uploaders.
+  * d/rules: preserve pristine Doxyfile. (Closes: #1043881)
+  * typo.patch: new: fix typo caught by lintian.
+
+ -- Étienne Mollier <emollier at debian.org>  Fri, 15 Dec 2023 19:09:45 +0100
+
 bamtools (2.5.2+dfsg-4) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -3,6 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Michael R. Crusoe <crusoe at debian.org>,
            Andreas Tille <tille at debian.org>,
            Kevin Murray <spam at kdmurray.id.au>,
+           Étienne Mollier <emollier at debian.org>
 Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13),


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
 0001-ignore-thirdparty-and-fix-jsoncpp.patch
 shared_and_static.patch
 #fix_soversion.patch
+typo.patch


=====================================
debian/patches/typo.patch
=====================================
@@ -0,0 +1,17 @@
+Description: fix typo caught by lintian.
+Author: Étienne Mollier <emollier at debian.org>
+Forwarded: https://github.com/pezmaster31/bamtools/pull/231
+Last-Update: 2023-12-15
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- bamtools.orig/src/toolkit/bamtools_filter.cpp
++++ bamtools/src/toolkit/bamtools_filter.cpp
+@@ -1020,7 +1020,7 @@
+     const std::string isFirstMateDesc = "keep only alignments marked as first mate?";
+     const std::string isMappedDesc = "keep only alignments that were mapped?";
+     const std::string isMateMappedDesc = "keep only alignments with mates that mapped";
+-    const std::string isMateReverseDesc = "keep only alignments with mate on reverese strand?";
++    const std::string isMateReverseDesc = "keep only alignments with mate on reverse strand?";
+     const std::string isPairedDesc = "keep only alignments that were sequenced as paired?";
+     const std::string isPrimaryDesc = "keep only alignments marked as primary?";
+     const std::string isProperPairDesc = "keep only alignments that passed PE resolution?";


=====================================
debian/rules
=====================================
@@ -18,6 +18,7 @@ ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 endif
 
 override_dh_auto_build-indep:
+	cp docs/Doxyfile docs/Doxyfile.orig
 	doxygen -u docs/Doxyfile
 	doxygen docs/Doxyfile
 
@@ -40,3 +41,6 @@ override_dh_install-indep:
 
 describe-current-version:
 	git describe --tags upstream | sed 's,^release-,,;s,-,+,;s,-,~,;'
+
+execute_after_dh_auto_clean:
+	test ! -f docs/Doxyfile.orig || mv docs/Doxyfile.orig docs/Doxyfile



View it on GitLab: https://salsa.debian.org/med-team/bamtools/-/compare/182162589ff8497424c4100c565be0a5532ce512...46e2b618cbbbab8d771324c4f6739d70734e29b2

-- 
View it on GitLab: https://salsa.debian.org/med-team/bamtools/-/compare/182162589ff8497424c4100c565be0a5532ce512...46e2b618cbbbab8d771324c4f6739d70734e29b2
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