[med-svn] [Git][med-team/igv][upstream] New upstream version 2.16.0+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch upstream at Debian Med / igv


Commits:
2f54090b by Pierre Gruet at 2023-02-01T22:36:03+01:00
New upstream version 2.16.0+dfsg
- - - - -


30 changed files:

- src/main/java/module-info.java
- src/main/java/org/broad/igv/Globals.java
- src/main/java/org/broad/igv/data/IGVDatasetParser.java
- src/main/java/org/broad/igv/data/seg/FreqData.java
- src/main/java/org/broad/igv/feature/FeatureUtils.java
- src/main/java/org/broad/igv/feature/PSLRecord.java
- src/main/java/org/broad/igv/feature/genome/GenomeManager.java
- src/main/java/org/broad/igv/feature/tribble/PSLCodec.java
- src/main/java/org/broad/igv/prefs/Constants.java
- src/main/java/org/broad/igv/prefs/IGVPreferences.java
- src/main/java/org/broad/igv/sam/Alignment.java
- src/main/java/org/broad/igv/sam/AlignmentRenderer.java
- src/main/java/org/broad/igv/sam/AlignmentTrack.java
- src/main/java/org/broad/igv/sam/AlignmentTrackMenu.java
- src/main/java/org/broad/igv/sam/CoverageTrack.java
- src/main/java/org/broad/igv/sam/ReadStats.java
- src/main/java/org/broad/igv/sam/SAMAlignment.java
- + src/main/java/org/broad/igv/sam/SMRTKineticsDecoder.java
- src/main/java/org/broad/igv/sam/reader/MergedAlignmentReader.java
- + src/main/java/org/broad/igv/sam/smrt/SMRTKinetics.java
- + src/main/java/org/broad/igv/sam/smrt/SMRTKineticsDecoder.java
- + src/main/java/org/broad/igv/sam/smrt/SMRTKineticsRenderer.java
- src/main/java/org/broad/igv/sashimi/SashimiJunctionRenderer.java
- src/main/java/org/broad/igv/tools/converters/ExpressionFormatter.java
- src/main/java/org/broad/igv/track/AbstractTrack.java
- src/main/java/org/broad/igv/ui/action/LoadFromURLMenuAction.java
- src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java
- src/main/java/org/broad/igv/ui/panel/ZoomSliderPanel.java
- src/main/java/org/broad/igv/ui/util/LoadFromURLDialog.java
- src/main/java/org/broad/igv/util/GoogleUtils.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/-/commit/2f54090b09a0483499a6f0a6f812c793375182aa

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View it on GitLab: https://salsa.debian.org/med-team/igv/-/commit/2f54090b09a0483499a6f0a6f812c793375182aa
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