[med-svn] [Git][med-team/igv][master] 4 commits: New upstream version 2.16.0+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / igv


Commits:
2f54090b by Pierre Gruet at 2023-02-01T22:36:03+01:00
New upstream version 2.16.0+dfsg
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5bd0a680 by Pierre Gruet at 2023-02-01T22:38:26+01:00
Update upstream source from tag 'upstream/2.16.0+dfsg'

Update to upstream version '2.16.0+dfsg'
with Debian dir 2e5c1d3a252f902ca80394fa1d0e34e1796113cc
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ca6c4657 by Pierre Gruet at 2023-02-01T22:45:48+01:00
Refreshing patches

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c2ed8131 by Pierre Gruet at 2023-02-01T22:47:38+01:00
Upload to unstable

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30 changed files:

- debian/changelog
- debian/patches/gradle_dependencies.patch
- debian/patches/omit_aws_stuff.patch
- src/main/java/module-info.java
- src/main/java/org/broad/igv/Globals.java
- src/main/java/org/broad/igv/data/IGVDatasetParser.java
- src/main/java/org/broad/igv/data/seg/FreqData.java
- src/main/java/org/broad/igv/feature/FeatureUtils.java
- src/main/java/org/broad/igv/feature/PSLRecord.java
- src/main/java/org/broad/igv/feature/genome/GenomeManager.java
- src/main/java/org/broad/igv/feature/tribble/PSLCodec.java
- src/main/java/org/broad/igv/prefs/Constants.java
- src/main/java/org/broad/igv/prefs/IGVPreferences.java
- src/main/java/org/broad/igv/sam/Alignment.java
- src/main/java/org/broad/igv/sam/AlignmentRenderer.java
- src/main/java/org/broad/igv/sam/AlignmentTrack.java
- src/main/java/org/broad/igv/sam/AlignmentTrackMenu.java
- src/main/java/org/broad/igv/sam/CoverageTrack.java
- src/main/java/org/broad/igv/sam/ReadStats.java
- src/main/java/org/broad/igv/sam/SAMAlignment.java
- + src/main/java/org/broad/igv/sam/SMRTKineticsDecoder.java
- src/main/java/org/broad/igv/sam/reader/MergedAlignmentReader.java
- + src/main/java/org/broad/igv/sam/smrt/SMRTKinetics.java
- + src/main/java/org/broad/igv/sam/smrt/SMRTKineticsDecoder.java
- + src/main/java/org/broad/igv/sam/smrt/SMRTKineticsRenderer.java
- src/main/java/org/broad/igv/sashimi/SashimiJunctionRenderer.java
- src/main/java/org/broad/igv/tools/converters/ExpressionFormatter.java
- src/main/java/org/broad/igv/track/AbstractTrack.java
- src/main/java/org/broad/igv/ui/action/LoadFromURLMenuAction.java
- src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/d93dc52ce6080c70dfed51a454ad3d48a7b65b4f...c2ed81317b64d09946d7ed6edbedf549241d8309

-- 
View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/d93dc52ce6080c70dfed51a454ad3d48a7b65b4f...c2ed81317b64d09946d7ed6edbedf549241d8309
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