[med-svn] [Git][med-team/snakemake][master] 9 commits: throttler was accepted

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / snakemake


Commits:
31c2588e by Andreas Tille at 2023-01-11T06:41:02+01:00
throttler was accepted

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1e92a6a5 by Andreas Tille at 2023-01-11T06:41:24+01:00
New upstream version 7.19.1
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940d722f by Andreas Tille at 2023-01-11T06:41:24+01:00
routine-update: New upstream version

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a7def4bc by Andreas Tille at 2023-01-11T06:41:47+01:00
Update upstream source from tag 'upstream/7.19.1'

Update to upstream version '7.19.1'
with Debian dir 3d6202da8437f957026ed1746ea8daa03b4acaa6
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eef18345 by Andreas Tille at 2023-01-11T06:41:48+01:00
routine-update: Standards-Version: 4.6.2

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f645c065 by Andreas Tille at 2023-01-11T07:29:09+01:00
Refresh patches

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639c1414 by Andreas Tille at 2023-01-11T08:21:03+01:00
  * Skip slurm tests since slurm is not setup at build time
  * Suggests: slurm-client

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fc405aa8 by Andreas Tille at 2023-01-11T08:45:31+01:00
Skip lint test that is known to fail

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8b090631 by Andreas Tille at 2023-01-11T08:50:38+01:00
Skip workflow test that is known to fail

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30 changed files:

- .github/workflows/main.yml
- CHANGELOG.md
- debian/changelog
- debian/control
- debian/patches/cirumvent-retry.patch
- debian/patches/python3.patch
- debian/patches/remove-yte.patch
- debian/patches/remove_ccbysa_snippets.patch
- debian/patches/series
- + debian/patches/skip-test-lint_long_run.patch
- + debian/patches/skip-test_workflow_calling.patch
- debian/patches/skip-tests-with-internet.patch
- + debian/patches/skip-tests-with-slurm.patch
- debian/patches/test_from_any_directory.patch
- docs/executing/cloud.rst
- docs/executing/cluster.rst
- docs/snakefiles/remote_files.rst
- docs/snakefiles/rules.rst
- setup.py
- snakemake/__init__.py
- snakemake/_version.py
- snakemake/common/__init__.py
- snakemake/dag.py
- snakemake/exceptions.py
- snakemake/executors/__init__.py
- + snakemake/executors/slurm/__init__.py
- + snakemake/executors/slurm/slurm_jobstep.py
- + snakemake/executors/slurm/slurm_submit.py
- snakemake/jobs.py
- snakemake/logging.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/165748c6d5984ba7b84a5ed9172b7c69a5f8ebde...8b0906316e05768a9638948aee04ba5f95e9b319

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View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/165748c6d5984ba7b84a5ed9172b7c69a5f8ebde...8b0906316e05768a9638948aee04ba5f95e9b319
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