[med-svn] [Git][med-team/resfinder][master] 6 commits: python-cgelib in salsa

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / resfinder


Commits:
b6d24659 by Andreas Tille at 2023-01-17T16:56:01+01:00
python-cgelib in salsa

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9d8bb45e by Andreas Tille at 2023-01-17T16:56:22+01:00
routine-update: New upstream version

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8c3f5cf4 by Andreas Tille at 2023-01-17T17:12:35+01:00
New upstream version 4.2.4
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d36bff33 by Andreas Tille at 2023-01-17T17:15:29+01:00
debian/get-orig-source fetches data together with uscan

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1eb25192 by Andreas Tille at 2023-01-17T17:15:37+01:00
New upstream version 4.2.4
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0ef8059e by Andreas Tille at 2023-01-17T17:15:39+01:00
Update upstream source from tag 'upstream/4.2.4'

Update to upstream version '4.2.4'
with Debian dir fab1ab8bb72441673e4fe0629e51f9bdc6be108b
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30 changed files:

- CHANGELOG.md
- + DEV_SETUP.md
- debian-tests-data/db_resfinder/VERSION
- debian-tests-data/db_resfinder/macrolide.fsa
- debian-tests-data/db_resfinder/oxazolidinone.fsa
- debian-tests-data/db_resfinder/quinolone.fsa
- debian/changelog
- debian/control
- + debian/get-orig-source
- debian/rules
- debian/tests/get-test-data
- debian/watch
- dockerfile
- src/resfinder/__init__.py
- src/resfinder/amr_abbreviations.md
- src/resfinder/cge/config.py
- src/resfinder/cge/output/gene_result.py
- src/resfinder/cge/output/phenotype_result.py
- src/resfinder/cge/output/seq_variation_result.py
- src/resfinder/cge/output/std_results.py
- src/resfinder/cge/phenotype2genotype/feature.py
- src/resfinder/cge/phenotype2genotype/isolate.py
- src/resfinder/cge/phenotype2genotype/res_profile.py
- src/resfinder/cge/pointfinder.py
- src/resfinder/run_resfinder.py
- + tests/data/test_isolate_11.fa
- + tests/data/test_isolate_11_1.fq
- + tests/data/test_isolate_11_2.fq
- tests/resfinder/cge/output/test_phenotype_result.md
- tests/resfinder/cge/output/test_seq_variation_result.md


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/resfinder/-/compare/6faa69c0de919d05023aadf855dc148dda7b1e88...0ef8059e3770daf23505fe9e710acea4bac818d3

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View it on GitLab: https://salsa.debian.org/med-team/resfinder/-/compare/6faa69c0de919d05023aadf855dc148dda7b1e88...0ef8059e3770daf23505fe9e710acea4bac818d3
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