[med-svn] [Git][med-team/sra-sdk][master] 15 commits: New upstream version 3.0.2+dfsg

[Aaron M. Ucko (@ucko)]

Aaron M. Ucko pushed to branch master at Debian Med / sra-sdk


Commits:
1400bb48 by Aaron M. Ucko at 2022-12-27T12:30:32-05:00
New upstream version 3.0.2+dfsg
- - - - -
27090bec by Aaron M. Ucko at 2022-12-27T15:21:05-05:00
Merge tag 'upstream/3.0.2+dfsg'

Upstream version 3.0.2(+dfsg).

- - - - -
8fa7e4f1 by Aaron M. Ucko at 2023-01-15T20:38:17-05:00
New upstream version 3.0.3+dfsg
- - - - -
a7dcc0e7 by Aaron M. Ucko at 2023-01-15T20:41:21-05:00
Merge tag 'upstream/3.0.3+dfsg'

Upstream version 3.0.3(+dfsg).

- - - - -
52dee6ae by Aaron M. Ucko at 2023-01-15T20:56:15-05:00
debian/patches: Update for 3.0.3 (3.0.1+, really).

In particular, account for layout changes and better support for using
system libraries.

- - - - -
6ca5347a by Aaron M. Ucko at 2023-01-15T21:56:40-05:00
d/rules: Correctly accommodate multiple supported Python versions.

I'd insufficiently adapted ncbi-ngs's relevant logic.

- - - - -
d3f15196 by Aaron M. Ucko at 2023-01-18T21:47:52-05:00
d/rules: Account for layout changes and CMAKE_INSTALL_LIBDIR support

... with the latter yielding multiarch paths.

- - - - -
679ca4be by Aaron M. Ucko at 2023-01-18T21:48:18-05:00
debian/{control,salsa-ci.yml}: Build against libncbi-vdb-dev 3.0.1+.

- - - - -
4be6d160 by Aaron M. Ucko at 2023-01-18T21:48:18-05:00
debian/copyright: Update for 3.0.3 (3.0.1+, really).

Account for layout changes as of 3.0.1 and drop references to content
removed upstream, both in Files-Excluded and in special cases.

- - - - -
32f271b0 by Aaron M. Ucko at 2023-01-18T21:48:19-05:00
.gitignore: Unhardcode architecture name in build tree (obj-*).

- - - - -
fab5f257 by Aaron M. Ucko at 2023-01-18T21:48:19-05:00
Ignore build results under ngs/ngs-python (dist, ngs.egg-info).

- - - - -
2107510c by Aaron M. Ucko at 2023-01-18T21:48:30-05:00
debian/rules: Clean up newly generated files under ngs/ngs-python.

- - - - -
473e7662 by Aaron M. Ucko at 2023-01-18T21:48:32-05:00
debian/{rules,sra-toolkit.install}: +/usr/lib/sra-toolkit (#1025278)

Move sratools and *-orig to a new /usr/lib/sra-toolkit directory;
repoint symlinks accordingly.

- - - - -
4752653e by Aaron M. Ucko at 2023-01-18T21:48:32-05:00
routine-update: Standards-Version: 4.6.2

- - - - -
d0f29526 by Aaron M. Ucko at 2023-01-18T21:48:32-05:00
Finalize sra-sdk 3.0.3+dfsg-1, still targeting experimental

(necessarily, until ncbi-vdb 3 hits unstable).

- - - - -


25 changed files:

- .gitignore
- CHANGES.md
- CMakeLists.txt
- − Makefile.old
- README-blastn
- README.md
- build/.gitignore
- − build/Makefile.cc
- − build/Makefile.clang
- − build/Makefile.deb
- build/Makefile.env
- − build/Makefile.env.old
- − build/Makefile.gcc
- − build/Makefile.icc
- − build/Makefile.install
- − build/Makefile.linux
- − build/Makefile.rpm
- − build/Makefile.rules
- − build/Makefile.scm
- − build/Makefile.shell
- − build/Makefile.targets
- − build/Makefile.tools
- build/Makefile.vers
- − build/Xcode/asm-trace/asm-trace.xcodeproj/project.pbxproj
- − build/Xcode/old-toolkit/.gitignore


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/sra-sdk/-/compare/28357c83c7254f8ff883f3fdeb505dd427c4833c...d0f29526aa51a0d4949349d5f8f8c8c31a361af2

-- 
View it on GitLab: https://salsa.debian.org/med-team/sra-sdk/-/compare/28357c83c7254f8ff883f3fdeb505dd427c4833c...d0f29526aa51a0d4949349d5f8f8c8c31a361af2
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20230119/f9480b50/attachment.htm>