[med-svn] [Git][med-team/hyphy][master] 6 commits: New upstream version 2.5.46+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / hyphy


Commits:
7631d8cd by Andreas Tille at 2023-01-24T15:45:15+01:00
New upstream version 2.5.46+dfsg
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5aa99705 by Andreas Tille at 2023-01-24T15:45:15+01:00
routine-update: New upstream version

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83fa6300 by Andreas Tille at 2023-01-24T15:45:24+01:00
Update upstream source from tag 'upstream/2.5.46+dfsg'

Update to upstream version '2.5.46+dfsg'
with Debian dir 2b542fdef41105e6fff1e8dfbe2f9000af6f99ea
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7ed903cf by Andreas Tille at 2023-01-24T15:45:24+01:00
routine-update: Standards-Version: 4.6.2

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9257dd8b by Andreas Tille at 2023-01-24T15:49:49+01:00
Refresh patches

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c82e311f by Andreas Tille at 2023-01-24T15:56:06+01:00
Upload to unstable

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29 changed files:

- + .github/workflows/codeql.yml
- CMakeLists.txt
- debian/changelog
- debian/control
- debian/patches/rm_arch_specific_flags.patch
- debian/patches/set-zlib-after-setting-default-libs.patch
- debian/patches/use_debian_sqlite.patch
- res/TemplateBatchFiles/CodonToProtein.bf
- res/TemplateBatchFiles/MSS-selector-2.bf
- res/TemplateBatchFiles/MSS-selector.bf
- res/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
- res/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
- res/TemplateBatchFiles/libv3/models/codon/BS_REL.bf
- res/TemplateBatchFiles/libv3/models/codon/MG_REV.bf
- res/TemplateBatchFiles/libv3/models/codon/MSS.bf
- res/TemplateBatchFiles/libv3/models/model_functions.bf
- res/TemplateBatchFiles/libv3/models/parameters.bf
- res/TemplateBatchFiles/libv3/tasks/ancestral.bf
- res/TemplateBatchFiles/libv3/tasks/trees.bf
- src/core/batchlan.cpp
- src/core/batchlanruntime.cpp
- src/core/calcnode.cpp
- src/core/dataset.cpp
- src/core/dataset_filter.cpp
- src/core/global_things.cpp
- src/core/include/likefunc.h
- src/core/include/matrix.h
- src/core/likefunc.cpp
- src/core/likefunc2.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/7d9b31bc836c2d89ba4457f14f95cd461e6d740c...c82e311f9dd23f1c2973e3844b59093a7815879c

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View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/7d9b31bc836c2d89ba4457f14f95cd461e6d740c...c82e311f9dd23f1c2973e3844b59093a7815879c
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