[med-svn] [Git][med-team/picard-tools][upstream] New upstream version 3.0.0+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch upstream at Debian Med / picard-tools


Commits:
1c5e7dd6 by Pierre Gruet at 2023-06-20T16:15:45+02:00
New upstream version 3.0.0+dfsg
- - - - -


30 changed files:

- .github/ISSUE_TEMPLATE.md
- .github/PULL_REQUEST_TEMPLATE.md
- + .github/workflows/tests.yml
- − .travis.yml
- Dockerfile
- README.md
- build.gradle
- gradle/wrapper/gradle-wrapper.properties
- gradlew
- src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java
- src/main/java/picard/analysis/CollectMultipleMetrics.java
- src/main/java/picard/analysis/CompareMetrics.java
- src/main/java/picard/arrays/CollectArraysVariantCallingMetrics.java
- src/main/java/picard/arrays/GtcToVcf.java
- src/main/java/picard/arrays/VcfToAdpc.java
- src/main/java/picard/arrays/illumina/Build37ExtendedIlluminaManifest.java
- src/main/java/picard/arrays/illumina/Build37ExtendedIlluminaManifestRecord.java
- src/main/java/picard/arrays/illumina/Build37ExtendedIlluminaManifestRecordCreator.java
- src/main/java/picard/arrays/illumina/CreateExtendedIlluminaManifest.java
- src/main/java/picard/arrays/illumina/IlluminaManifest.java
- src/main/java/picard/arrays/illumina/IlluminaManifestRecord.java
- src/main/java/picard/arrays/illumina/InfiniumNormalizationManifest.java
- − src/main/java/picard/cmdline/ClassFinder.java
- src/main/java/picard/cmdline/CommandLineProgram.java
- src/main/java/picard/cmdline/PicardCommandLine.java
- src/main/java/picard/fingerprint/CheckFingerprint.java
- src/main/java/picard/fingerprint/CrosscheckFingerprints.java
- src/main/java/picard/fingerprint/CrosscheckMetric.java
- src/main/java/picard/fingerprint/Fingerprint.java
- src/main/java/picard/fingerprint/FingerprintUtils.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/commit/1c5e7dd6f007673eaa76c8e13d795332acd01ced

-- 
View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/commit/1c5e7dd6f007673eaa76c8e13d795332acd01ced
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20230705/1af4e83d/attachment.htm>