[med-svn] [Git][med-team/toil][master] 5 commits: New upstream version 5.11.0

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / toil


Commits:
45d2e66f by Andreas Tille at 2023-07-13T15:37:33+02:00
New upstream version 5.11.0
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f9ea8591 by Andreas Tille at 2023-07-13T15:37:33+02:00
routine-update: New upstream version

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162bfcba by Andreas Tille at 2023-07-13T15:37:41+02:00
Update upstream source from tag 'upstream/5.11.0'

Update to upstream version '5.11.0'
with Debian dir 2ab500559c80e3ac3f04cfea7c9c8afe6a56cf23
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6993b99b by Andreas Tille at 2023-07-13T15:54:46+02:00
Update patches

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4fe53a73 by Andreas Tille at 2023-07-13T16:20:34+02:00
Build-Depends: python3-sphinx-autoapi, python3-sphinx-autodoc-typehints, python3-sphinxcontrib.autoprogram

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30 changed files:

- .github/dependabot.yml
- .github/workflows/codeql-analysis.yml
- .gitlab-ci.yml
- Makefile
- contrib/admin/mypy-with-ignore.py
- contrib/slurm-test/docker-compose.yml
- contrib/slurm-test/slurm_test.sh
- contrib/toil-ci-prebake/Dockerfile
- debian/changelog
- debian/control
- debian/patches/atomic_copy_as_alternative.patch
- debian/patches/debianize_docs
- − debian/patches/ec2_error.patch
- − debian/patches/exit_code_exception
- debian/patches/no_galaxy_lib
- debian/patches/series
- debian/patches/setting_version.patch
- − debian/patches/ship_tests
- debian/patches/skip_py_tes_dep
- debian/patches/soften-mesos-deps
- debian/patches/soften-pydocker-dep
- docs/Makefile
- docs/appendices/environment_vars.rst
- docs/conf.py
- docs/developingWorkflows/developing.rst
- docs/developingWorkflows/toilAPI.rst
- docs/developingWorkflows/toilAPIBatchsystem.rst
- docs/developingWorkflows/toilAPIExceptions.rst
- docs/developingWorkflows/toilAPIFilestore.rst
- docs/developingWorkflows/toilAPIJobFunctions.rst


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/00b14cbcb22eea0330beed336b567b08aac09a56...4fe53a73e815b4282fe91e03b56be31c4d20aa7d

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View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/00b14cbcb22eea0330beed336b567b08aac09a56...4fe53a73e815b4282fe91e03b56be31c4d20aa7d
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