[med-svn] [Git][med-team/toil][upstream] New upstream version 5.11.0

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / toil


Commits:
45d2e66f by Andreas Tille at 2023-07-13T15:37:33+02:00
New upstream version 5.11.0
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30 changed files:

- .github/dependabot.yml
- .github/workflows/codeql-analysis.yml
- .gitlab-ci.yml
- Makefile
- contrib/admin/mypy-with-ignore.py
- contrib/slurm-test/docker-compose.yml
- contrib/slurm-test/slurm_test.sh
- contrib/toil-ci-prebake/Dockerfile
- docs/Makefile
- docs/appendices/environment_vars.rst
- docs/conf.py
- docs/developingWorkflows/developing.rst
- docs/developingWorkflows/toilAPI.rst
- docs/developingWorkflows/toilAPIBatchsystem.rst
- docs/developingWorkflows/toilAPIExceptions.rst
- docs/developingWorkflows/toilAPIFilestore.rst
- docs/developingWorkflows/toilAPIJobFunctions.rst
- docs/developingWorkflows/toilAPIJobstore.rst
- docs/developingWorkflows/toilAPIMethods.rst
- docs/developingWorkflows/toilAPIRunner.rst
- docs/developingWorkflows/toilAPIService.rst
- docs/index.rst
- docs/running/cliOptions.rst
- docs/running/cloud/amazon.rst
- docs/running/cloud/kubernetes.rst
- docs/running/wdl.rst
- requirements-aws.txt
- requirements-cwl.txt
- requirements-dev.txt
- requirements-google.txt


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/commit/45d2e66fd40ecd9cfbcc665d3efffe8b98242578

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