[med-svn] [Git][med-team/snakemake][main] 4 commits: New upstream version 7.28.1

[Rebecca N. Palmer (@rnpalmer-guest)]

Rebecca N. Palmer pushed to branch main at Debian Med / snakemake


Commits:
5dce27f9 by Rebecca N. Palmer at 2023-06-12T07:29:40+01:00
New upstream version 7.28.1
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e5eff072 by Rebecca N. Palmer at 2023-06-12T07:30:08+01:00
Update upstream source from tag 'upstream/7.28.1'

Update to upstream version '7.28.1'
with Debian dir 36571f621b1295c3636a1fd06d5e5f1fd1a120e4
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da9e1967 by Rebecca N. Palmer at 2023-06-12T07:39:53+01:00
Update d/copyright.

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4c1e77d0 by Rebecca N. Palmer at 2023-06-12T08:03:23+01:00
Refresh patches.

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30 changed files:

- .github/workflows/docker-publish.yml
- .github/workflows/main.yml
- + .github/workflows/scripts/sacct-proxy.py
- .github/workflows/test-flux.yaml
- CHANGELOG.md
- Dockerfile
- debian/changelog
- debian/copyright
- debian/patches/cirumvent-retry.patch
- debian/patches/fix_test_pytest.patch
- debian/patches/python2to3.patch
- debian/patches/python3.patch
- debian/patches/remove-yte.patch
- debian/patches/remove_ccbysa_snippets.patch
- debian/patches/reproducible-build.patch
- debian/patches/skip-tests-with-slurm.patch
- debian/patches/test_from_any_directory.patch
- docs/executing/cloud.rst
- docs/executing/cluster.rst
- + docs/executor_tutorial/azure_batch.rst
- docs/executor_tutorial/flux.rst
- docs/executor_tutorial/tutorial.rst
- docs/project_info/contributing.rst
- docs/snakefiles/configuration.rst
- docs/snakefiles/modularization.rst
- docs/snakefiles/remote_files.rst
- docs/snakefiles/rules.rst
- docs/snakefiles/writing_snakefiles.rst
- docs/tutorial/setup.rst
- misc/nano/syntax/snakemake.nanorc


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/46c715a847d83e15122bb6bfdb9ec551ba2f3a4a...4c1e77d08e89478b1447b5e419bbe61a7936ece3

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View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/46c715a847d83e15122bb6bfdb9ec551ba2f3a4a...4c1e77d08e89478b1447b5e419bbe61a7936ece3
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