[med-svn] [Git][med-team/samtools][master] 11 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / samtools


Commits:
f92998e4 by Étienne Mollier at 2023-06-12T20:34:13+02:00
routine-update: New upstream version

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16dda270 by Étienne Mollier at 2023-06-12T20:34:14+02:00
New upstream version 1.17
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e038e722 by Étienne Mollier at 2023-06-12T20:34:30+02:00
Update upstream source from tag 'upstream/1.17'

Update to upstream version '1.17'
with Debian dir 7083a0de4b9ae81e7003016619b5c4804d76e36c
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99aa7c6b by Étienne Mollier at 2023-06-12T20:34:30+02:00
routine-update: Standards-Version: 4.6.2

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aebe148f by Étienne Mollier at 2023-06-12T20:37:00+02:00
samtools-fasta-q-whatis.patch: unfuzz

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dac74908 by Étienne Mollier at 2023-06-12T20:37:15+02:00
d/control: clean obsolete package from Breaks:

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5d5421ae by Étienne Mollier at 2023-06-12T20:38:38+02:00
update changelog

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66a6b6e0 by Étienne Mollier at 2023-06-12T20:53:14+02:00
d/control: build depends on libhts-dev (>= 1.17~)

Trying to build against older versions will result at best with:

	reset.c:107:20: warning: implicit declaration of function ‘bam_aux_first’; did you mean ‘bam_aux_get’? [-Wimplicit-function-declaration]

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f3e3ea1a by Étienne Mollier at 2023-06-12T20:54:37+02:00
d/control: build depends on libncurses-dev

This replaces the build dependency on libncurses5-dev, which is
flagged as obsolete by lintian.

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7adec786 by Étienne Mollier at 2023-06-12T20:59:35+02:00
d/*.lintian-overrides: update mismatched override

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1cc8cf98 by Étienne Mollier at 2023-06-12T23:27:59+02:00
update changelog

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11 changed files:

- LICENSE
- Makefile
- NEWS
- README
- amplicon_stats.c
- bam2bcf.c
- bam2depth.c
- bam_ampliconclip.c
- bam_consensus.c
- bam_import.c
- bam_markdup.c


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/samtools/-/compare/e051fd0fcc5b457b2b4b0856105fc35ba919347a...1cc8cf9883be110a933313d336474387820cfcf0

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View it on GitLab: https://salsa.debian.org/med-team/samtools/-/compare/e051fd0fcc5b457b2b4b0856105fc35ba919347a...1cc8cf9883be110a933313d336474387820cfcf0
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