[med-svn] [Git][med-team/subread][master] 8 commits: d/copyright, remove .o files and prebuilt binary from src/longread-one

[Alexandre Mestiashvili (@mestia)]

Alexandre Mestiashvili pushed to branch master at Debian Med / subread


Commits:
6e40bf0f by Alexandre Mestiashvili at 2023-03-11T12:46:13+01:00
d/copyright, remove .o files and prebuilt binary from src/longread-one

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1a8f93e9 by Alexandre Mestiashvili at 2023-03-11T12:46:46+01:00
New upstream version 2.0.4+dfsg
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175e9fe4 by Alexandre Mestiashvili at 2023-03-11T12:47:35+01:00
Update upstream source from tag 'upstream/2.0.4+dfsg'

Update to upstream version '2.0.4+dfsg'
with Debian dir 418ab6b282939b8f2254ca55f6d5ce3e0341b44d
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7787ecc1 by Alexandre Mestiashvili at 2023-03-11T12:47:51+01:00
d/patches, update and refresh

Incorporare cross patch into arch_specific_flags.patch

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dd6cd944 by Alexandre Mestiashvili at 2023-03-11T12:48:23+01:00
d/*.1, generate manpages

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c496fae2 by Alexandre Mestiashvili at 2023-03-11T12:48:40+01:00
remove unused d/filter.pl

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c0ce659c by Alexandre Mestiashvili at 2023-03-11T12:49:01+01:00
d/control, bump debhelper-compat and policy versions

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8d8c4601 by Alexandre Mestiashvili at 2023-03-11T12:59:51+01:00
Update d/changelog

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30 changed files:

- + annotation/mm39_RefSeq_exon.txt.gz
- debian/changelog
- debian/control
- debian/copyright
- debian/exactSNP.1
- debian/featureCounts.1
- − debian/filter.pl
- debian/flattenGTF.1
- debian/genRandomReads.1
- debian/patches/2to3.patch
- debian/patches/arch_specific_flags.patch
- debian/patches/fix_ftbfs_kfreebsd.patch
- debian/patches/series
- debian/patches/typo.patch
- debian/propmapped.1
- debian/qualityScores.1
- debian/removeDup.1
- debian/repair.1
- debian/subindel.1
- debian/subjunc.1
- debian/sublong.1
- debian/subread-align.1
- debian/subread-buildindex.1
- debian/subread-fullscan.1
- doc/SubreadUsersGuide.tex
- src/HelperFunctions.c
- src/HelperFunctions.h
- src/Makefile.Linux
- src/core-indel.c
- src/core-indel.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/subread/-/compare/9221d0bd1243ae463ab2b563da8356c5c14da5c5...8d8c4601c9c541c83e07be5f3e18041e7c3c5a8a

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View it on GitLab: https://salsa.debian.org/med-team/subread/-/compare/9221d0bd1243ae463ab2b563da8356c5c14da5c5...8d8c4601c9c541c83e07be5f3e18041e7c3c5a8a
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