[med-svn] [Git][med-team/hyphy][master] 3 commits: New upstream version 2.5.50+dfsg

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / hyphy


Commits:
6bfe108e by Nilesh Patra at 2023-05-09T22:21:01+05:30
New upstream version 2.5.50+dfsg
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f505b1d0 by Nilesh Patra at 2023-05-09T22:21:01+05:30
Refresh patches

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0dc20b5b by Nilesh Patra at 2023-05-09T22:29:03+05:30
Interim d/ch

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30 changed files:

- − .github/workflows/benchmark.yml
- − .github/workflows/codeql.yml
- − .github/workflows/coverage.yml
- − .github/workflows/stale.yml
- − .travis.yml
- CMakeLists.txt
- debian/changelog
- debian/patches/rm_arch_specific_flags.patch
- debian/patches/set-zlib-after-setting-default-libs.patch
- debian/patches/use_debian_sqlite.patch
- res/TemplateBatchFiles/MSS-selector-2.bf
- res/TemplateBatchFiles/MSS-selector.bf
- res/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
- res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
- res/TemplateBatchFiles/libv3/IOFunctions.bf
- res/TemplateBatchFiles/libv3/UtilityFunctions.bf
- res/TemplateBatchFiles/libv3/all-terms.bf
- res/TemplateBatchFiles/libv3/models/parameters.bf
- res/TemplateBatchFiles/libv3/models/rate_variation.bf
- res/TemplateBatchFiles/libv3/tasks/alignments.bf
- res/TemplateBatchFiles/libv3/tasks/estimators.bf
- res/TemplateBatchFiles/libv3/tasks/trees.bf
- src/core/associative_list.cpp
- src/core/avllistx.cpp
- src/core/batchlan.cpp
- src/core/batchlanruntime.cpp
- src/core/calcnode.cpp
- src/core/category.cpp
- src/core/dataset.cpp
- src/core/global_things.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/25524073cecb9741138300f860cb0f0499cd449a...0dc20b5bf2146c8e5116cc59263c335483c2c15c

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View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/25524073cecb9741138300f860cb0f0499cd449a...0dc20b5bf2146c8e5116cc59263c335483c2c15c
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