[med-svn] [Git][med-team/mmseqs2][master] 7 commits: New upstream version 15-6f452+ds

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / mmseqs2


Commits:
bbeae25d by Michael R. Crusoe at 2023-10-31T11:08:11+01:00
New upstream version 15-6f452+ds
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a6c682cf by Michael R. Crusoe at 2023-10-31T11:08:23+01:00
Update upstream source from tag 'upstream/15-6f452+ds'

Update to upstream version '15-6f452+ds'
with Debian dir 8a75c84a4c30c6712a81ddbfd5bc2c178ed94157
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9cf49c48 by Michael R. Crusoe at 2023-10-31T11:09:56+01:00
New upstream release.

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6a075fe2 by Michael R. Crusoe at 2023-10-31T11:09:56+01:00
d/rules: remove mmseqs_wrapper.bat hack, fixed upstream.

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339aeaf7 by Michael R. Crusoe at 2023-10-31T11:09:56+01:00
d/patches: refreshed; dropped gcc-13 patch applied upstream.

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de6e6077 by Michael R. Crusoe at 2023-10-31T11:10:27+01:00
routine-update: Standards-Version: 4.6.2

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a1a500e5 by Michael R. Crusoe at 2023-10-31T11:10:34+01:00
routine-update: Ready to upload to unstable

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30 changed files:

- .cirrus.yml
- + .github/workflows/mac-arm64.yml
- CMakeLists.txt
- azure-pipelines.yml
- data/workflow/blastp.sh
- data/workflow/blastpgp.sh
- data/workflow/databases.sh
- data/workflow/iterativepp.sh
- data/workflow/rbh.sh
- debian/changelog
- debian/control
- − debian/patches/fix-gcc-13.patch
- debian/patches/fix_tests.patch
- debian/patches/series
- debian/patches/use_system_gzstream.patch
- debian/rules
- lib/alp/sls_pvalues.hpp
- lib/ksw2/kseq.h
- src/CMakeLists.txt
- src/CommandDeclarations.h
- src/MMseqsBase.cpp
- src/alignment/BandedNucleotideAligner.cpp
- src/alignment/Matcher.cpp
- src/alignment/MultipleAlignment.cpp
- src/alignment/PSSMCalculator.cpp
- src/alignment/PSSMCalculator.h
- src/alignment/StripedSmithWaterman.cpp
- src/alignment/StripedSmithWaterman.h
- src/alignment/rescorediagonal.cpp
- src/clustering/Clustering.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/-/compare/79e198c9b8cd79b890ced820063bcf11e1586af4...a1a500e58ae909b9ab5243bab28134b3b89a579f

-- 
View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/-/compare/79e198c9b8cd79b890ced820063bcf11e1586af4...a1a500e58ae909b9ab5243bab28134b3b89a579f
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