[med-svn] [Git][med-team/hyphy][upstream] New upstream version 2.5.56+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / hyphy


Commits:
15b23388 by Étienne Mollier at 2023-11-06T22:51:15+01:00
New upstream version 2.5.56+dfsg
- - - - -


30 changed files:

- CMakeLists.txt
- res/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
- res/TemplateBatchFiles/SelectionAnalyses/FEL.bf
- res/TemplateBatchFiles/SelectionAnalyses/MEME.bf
- res/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf
- res/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf
- res/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf
- res/TemplateBatchFiles/YangNielsenBranchSite2005.bf
- res/TemplateBatchFiles/files.lst
- res/TemplateBatchFiles/libv3/IOFunctions.bf
- res/TemplateBatchFiles/libv3/UtilityFunctions.bf
- res/TemplateBatchFiles/libv3/all-terms.bf
- res/TemplateBatchFiles/libv3/convenience/math.bf
- res/TemplateBatchFiles/libv3/convenience/regexp.bf
- res/TemplateBatchFiles/libv3/models/codon/MG_REV.bf
- res/TemplateBatchFiles/libv3/models/frequencies.bf
- res/TemplateBatchFiles/libv3/models/model_functions.bf
- res/TemplateBatchFiles/libv3/models/parameters.bf
- res/TemplateBatchFiles/libv3/tasks/estimators.bf
- res/TemplateBatchFiles/libv3/tasks/trees.bf
- src/core/avllistxl.cpp
- src/core/batchlan.cpp
- src/core/batchlanruntime.cpp
- src/core/constant.cpp
- src/core/formula.cpp
- src/core/fstring.cpp
- src/core/global_things.cpp
- src/core/include/avllistxl.h
- src/core/include/constant.h
- src/core/include/formula.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/commit/15b23388240f34da4d57eaf22ffee3fb6f660b1d

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