[med-svn] [Git][med-team/macs][master] 5 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / macs


Commits:
c2d80851 by Andreas Tille at 2023-11-10T15:11:49+01:00
routine-update: New upstream version

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4001dbde by Andreas Tille at 2023-11-10T15:11:55+01:00
New upstream version 3.0.0~b3
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657f5ed1 by Andreas Tille at 2023-11-10T15:20:13+01:00
Update upstream source from tag 'upstream/3.0.0_b3'

Update to upstream version '3.0.0~b3'
with Debian dir fe490cf6a2cbae4152921ef80767ff1a97ec2532
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1cb6de0b by Andreas Tille at 2023-11-10T15:30:07+01:00
Refresh patches

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133fc00c by Andreas Tille at 2023-11-10T15:35:42+01:00
TODO: Needs new dependency: cykhash

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30 changed files:

- + .dockerignore
- .github/workflows/build-and-test-MACS2-macos12.yml → .github/workflows/build-and-test-MACS3-macos12.yml
- .github/workflows/build-and-test-MACS2-non-x64.yml → .github/workflows/build-and-test-MACS3-non-x64.yml
- .github/workflows/build-and-test-MACS2-x64.yml → .github/workflows/build-and-test-MACS3-x64.yml
- + .github/workflows/publish-to-anaconda.yml
- .github/workflows/publish-to-pypi.yml
- .gitignore
- + .gitmodules
- + CONTRIBUTING.md
- ChangeLog
- − DOCKER/Dockerfile
- − DOCKER/Dockerfile-slim
- − DOCKER/README.md
- LICENSE
- − MACS2/Constants.py
- − MACS2/IO/CallPeakUnitPrecompiled.c
- − MACS2/Statistics.pyx
- − MACS2/__init__.py
- − MACS2/diffpeak_cmd.py
- − MACS2/khash.pxd
- MACS2/IO/__init__.py → MACS3/Commands/__init__.py
- MACS2/bdgbroadcall_cmd.py → MACS3/Commands/bdgbroadcall_cmd.py
- MACS2/bdgcmp_cmd.py → MACS3/Commands/bdgcmp_cmd.py
- MACS2/bdgdiff_cmd.py → MACS3/Commands/bdgdiff_cmd.py
- MACS2/bdgopt_cmd.py → MACS3/Commands/bdgopt_cmd.py
- MACS2/bdgpeakcall_cmd.py → MACS3/Commands/bdgpeakcall_cmd.py
- MACS2/callpeak_cmd.py → MACS3/Commands/callpeak_cmd.py
- + MACS3/Commands/callvar_cmd.py
- MACS2/cmbreps_cmd.py → MACS3/Commands/cmbreps_cmd.py
- + MACS3/Commands/diffpeak_cmd.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/macs/-/compare/c2322394cfdde39f892b51305027630148c136e4...133fc00ce3d3ad66c60f645d0572eee57e8060e6

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View it on GitLab: https://salsa.debian.org/med-team/macs/-/compare/c2322394cfdde39f892b51305027630148c136e4...133fc00ce3d3ad66c60f645d0572eee57e8060e6
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