[med-svn] [Git][med-team/macs][master] 6 commits: routine-update: New upstream version

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / macs


Commits:
2fe67243 by Michael R. Crusoe at 2023-11-15T20:44:36+01:00
routine-update: New upstream version

- - - - -
9a7ca9d2 by Michael R. Crusoe at 2023-11-15T20:44:40+01:00
New upstream version 3.0.0
- - - - -
58326079 by Michael R. Crusoe at 2023-11-15T20:52:04+01:00
Update upstream source from tag 'upstream/3.0.0'

Update to upstream version '3.0.0'
with Debian dir dc4365cf685efa9c9bc5963948b76b45a2cd3b89
- - - - -
59b2e5a5 by Michael R. Crusoe at 2023-11-16T11:22:27+01:00
Refreshed patches.

- - - - -
2eead762 by Michael R. Crusoe at 2023-11-16T11:30:03+01:00
d/copyright: MACS2/khash.h→MACS3/fermi-lite/khash.h

- - - - -
d8b8487d by Michael R. Crusoe at 2023-11-16T17:25:12+01:00
d/clean: remove temp/ directory leftover from test execution.

- - - - -


29 changed files:

- .github/ISSUE_TEMPLATE/bug_report.md
- + .github/ISSUE_TEMPLATE/windows_issues.md
- .github/workflows/build-and-test-MACS3-macos12.yml
- .github/workflows/build-and-test-MACS3-non-x64.yml
- .github/workflows/build-and-test-MACS3-x64.yml
- ChangeLog
- MACS3/Commands/bdgpeakcall_cmd.py
- MACS3/Commands/hmmratac_cmd.py
- MACS3/IO/Parser.pyx
- MACS3/Signal/BedGraph.pyx
- MACS3/Signal/PeakVariants.pyx
- MACS3/Signal/Pileup.pyx
- MACS3/Utilities/Constants.py
- README.md
- bin/macs3
- conda/macs3/meta.yaml
- debian/changelog
- debian/clean
- debian/copyright
- debian/patches/keep_debug
- − debian/patches/link-libm.patch
- debian/patches/series
- + docs/Advanced_Step-by-step_Peak_Calling.md
- docs/INSTALL.md
- docs/bdgbroadcall.md
- docs/bdgcmp.md
- docs/bdgdiff.md
- docs/bdgopt.md
- docs/bdgpeakcall.md


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/macs/-/compare/2a95bbf50da785797bca410474676c30d800e5a8...d8b8487d96a4003888b60c364c1efe34e501ae86

-- 
View it on GitLab: https://salsa.debian.org/med-team/macs/-/compare/2a95bbf50da785797bca410474676c30d800e5a8...d8b8487d96a4003888b60c364c1efe34e501ae86
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20231116/3faf86d7/attachment.htm>