[med-svn] [Git][med-team/gmap][master] 6 commits: routine-update: New upstream version

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / gmap


Commits:
0237a0c6 by Michael R. Crusoe at 2023-10-05T15:25:06+02:00
routine-update: New upstream version

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31fefcdd by Michael R. Crusoe at 2023-10-05T15:25:07+02:00
New upstream version 2023-10-01+ds
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84e83f9a by Michael R. Crusoe at 2023-10-05T15:25:13+02:00
Update upstream source from tag 'upstream/2023-10-01+ds'

Update to upstream version '2023-10-01+ds'
with Debian dir 2cce7ab20209b5ae57e8a4bb36ce60deedb59485
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c2ebe66e by Michael R. Crusoe at 2023-10-05T15:58:41+02:00
Refreshed patches.

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9a3b9542 by Michael R. Crusoe at 2023-10-05T17:57:46+02:00
ignore HAVE_TZCNT & HAVE_LZCNT

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e6bc235d by Michael R. Crusoe at 2023-10-05T17:57:46+02:00
routine-update: Ready to upload to unstable

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23 changed files:

- ChangeLog
- VERSION
- configure.ac
- debian/changelog
- debian/patches/remove_getopt_code_copy.patch
- debian/patches/simd_fixes
- debian/rules
- src/Makefile.am
- src/compress.c
- src/compress.h
- src/concordance.c
- src/concordance.h
- src/exon.c
- src/extension-search.c
- src/extension-search.h
- src/genomebits.c
- src/genomebits_consec.c
- src/genomebits_count.c
- src/gsnap.c
- src/hitlistpool.c
- src/hitlistpool.h
- src/indel.c
- src/indel.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/gmap/-/compare/364ee9af19d965b98def9d7e3b8edc79552bbcbc...e6bc235d50cd0f7f4553dc532126242ca6d446fb

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View it on GitLab: https://salsa.debian.org/med-team/gmap/-/compare/364ee9af19d965b98def9d7e3b8edc79552bbcbc...e6bc235d50cd0f7f4553dc532126242ca6d446fb
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