[med-svn] [Git][med-team/augur][upstream] New upstream version 23.0.0

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / augur


Commits:
b21203e0 by Étienne Mollier at 2023-09-10T19:31:42+02:00
New upstream version 23.0.0
- - - - -


30 changed files:

- + .flake8
- .github/pull_request_template.md
- .github/workflows/ci.yaml
- .readthedocs.yml
- CHANGES.md
- augur/__init__.py
- augur/__version__.py
- augur/ancestral.py
- augur/argparse_.py
- augur/data/schema-export-v2.json
- augur/distance.py
- augur/export_v1.py
- augur/export_v2.py
- augur/filter/include_exclude_rules.py
- augur/frequencies.py
- augur/frequency_estimators.py
- augur/index.py
- augur/io/__init__.py
- augur/mask.py
- augur/reconstruct_sequences.py
- augur/refine.py
- augur/sequence_traits.py
- augur/titer_model.py
- augur/titers.py
- augur/traits.py
- augur/translate.py
- augur/tree.py
- augur/utils.py
- augur/validate.py
- docs/contribute/DEV_DOCS.md


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/augur/-/commit/b21203e0b70f7f623eb42feef1fa37f59a3cd373

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