[med-svn] [Git][med-team/augur][upstream] New upstream version 23.1.0

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / augur


Commits:
cfab603b by Étienne Mollier at 2023-09-27T21:36:02+02:00
New upstream version 23.1.0
- - - - -


24 changed files:

- .github/workflows/ci.yaml
- .gitignore
- CHANGES.md
- + LICENSE.nextstrain-cli
- augur/__version__.py
- augur/ancestral.py
- + augur/data/__init__.py
- augur/data/schema-auspice-config-v2.json
- augur/data/schema-export-v2.json
- augur/export_v2.py
- augur/util_support/color_parser.py
- augur/utils.py
- augur/validate.py
- devel/release
- devel/test
- docs/contribute/DEV_DOCS.md
- scripts/diff_jsons.py
- setup.py
- − tests/builds/add_to_alignment/Snakefile
- − tests/builds/add_to_alignment/data/aligned.fasta
- − tests/builds/add_to_alignment/data/metadata.tsv
- − tests/builds/add_to_alignment/data/new1.fasta
- − tests/builds/add_to_alignment/data/new2.fasta
- − tests/builds/add_to_alignment/data/new3_present_in_alignment.fasta


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/augur/-/commit/cfab603bd232995366835f56e577e759628c3149

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