[med-svn] [Git][med-team/kalign][master] 6 commits: routine-update: New upstream version

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / kalign


Commits:
3a3c9ce2 by Michael R. Crusoe at 2024-04-02T13:25:04+02:00
routine-update: New upstream version

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0da8b281 by Michael R. Crusoe at 2024-04-02T13:25:05+02:00
New upstream version 3.4.0
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8df81634 by Michael R. Crusoe at 2024-04-02T13:25:07+02:00
Update upstream source from tag 'upstream/3.4.0'

Update to upstream version '3.4.0'
with Debian dir 1a93845bf26cb2b3e7976e7fc978e33059d0df8d
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a5252768 by Michael R. Crusoe at 2024-04-02T13:48:32+02:00
d/patches: disable pass-proper-flags.patch for now.

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14b0bf1d by Michael R. Crusoe at 2024-04-02T13:49:01+02:00
fix epoch

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8b8bb89b by Michael R. Crusoe at 2024-04-02T13:49:50+02:00
routine-update: Ready to upload to unstable

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30 changed files:

- .gitignore
- CMakeLists.txt
- ChangeLog
- debian/changelog
- debian/patches/series
- lib/CMakeLists.txt
- lib/src/aln_controller.c
- lib/src/aln_run.c
- lib/src/aln_seqseq.c
- lib/src/aln_struct.h
- lib/src/aln_wrap.c
- lib/src/bisectingKmeans.c
- lib/src/bisectingKmeans.h
- lib/src/bpm.c
- lib/src/bpm.h
- lib/src/bpm_test.c
- + lib/src/core.h
- + lib/src/coretralign.c
- + lib/src/coretralign.h
- lib/src/msa_alloc.c
- lib/src/msa_alloc.h
- lib/src/msa_check.c
- lib/src/msa_io.c
- lib/src/msa_op.c
- lib/src/msa_op.h
- + lib/src/msa_sort.c
- + lib/src/msa_sort.h
- lib/src/msa_struct.h
- lib/src/sequence_distance.c
- src/CMakeLists.txt


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/kalign/-/compare/d2158e67f7768960abdbcdc6f4abf9d7e0e33d4f...8b8bb89b976a9c7011570a1149fce3b6f22aef86

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View it on GitLab: https://salsa.debian.org/med-team/kalign/-/compare/d2158e67f7768960abdbcdc6f4abf9d7e0e33d4f...8b8bb89b976a9c7011570a1149fce3b6f22aef86
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