[med-svn] [Git][med-team/drop-seq][master] 13 commits: New upstream version 3.0.0+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / drop-seq


Commits:
51fcf2ab by Pierre Gruet at 2024-04-19T22:46:04+02:00
New upstream version 3.0.0+dfsg
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2a349eb1 by Pierre Gruet at 2024-04-19T22:46:45+02:00
Update upstream source from tag 'upstream/3.0.0+dfsg'

Update to upstream version '3.0.0+dfsg'
with Debian dir 01a1421794ef129ffe65f63ed179809d0af6dfff
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71048b3f by Pierre Gruet at 2024-04-19T22:56:27+02:00
Refreshing patches

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09ea142a by Pierre Gruet at 2024-04-19T22:56:41+02:00
Raising Standards version to 4.7.0 (no change)

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a560df18 by Pierre Gruet at 2024-04-19T22:58:06+02:00
Bumping years in d/copyright

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4c71163e by Pierre Gruet at 2024-04-19T22:58:28+02:00
Updating changelog

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023ea06b by Pierre Gruet at 2024-04-23T13:46:25+02:00
Putting classes of src/testFixtures in src/tests for the build

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81998c18 by Pierre Gruet at 2024-04-23T13:47:14+02:00
Patching out invocation of unpackaged google.api.gax classes

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188febb8 by Pierre Gruet at 2024-04-23T13:47:52+02:00
Avoiding the use of recent OpenJDK-21 methods

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f1c40bd1 by Pierre Gruet at 2024-04-23T13:48:18+02:00
Putting defs.sh out of /usr/bin

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639dec7c by Pierre Gruet at 2024-04-23T13:48:43+02:00
Updating autopkgtests after changes in the software

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09606d75 by Pierre Gruet at 2024-04-23T13:49:03+02:00
Updating changelog

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551ad6d9 by Pierre Gruet at 2024-04-23T13:49:50+02:00
Upload to unstable

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30 changed files:

- − .travis.yml
- README.md
- build.xml
- debian/changelog
- debian/control
- debian/copyright
- debian/drop-seq-tools.install
- debian/patches/link_excluded_file.patch
- + debian/patches/no_google_api_gax.patch
- + debian/patches/openjdk_21_syntax.patch
- debian/patches/paths_in_scripts.patch
- + debian/patches/put_defs_sh_out_of_path.patch
- debian/patches/series
- debian/rules
- debian/tests/run-unit-test
- + dropseq/build.gradle.kts
- + gradle/wrapper/gradle-wrapper.jar
- + gradle/wrapper/gradle-wrapper.properties
- + gradlew
- + gradlew.bat
- − public.iml
- + settings.gradle.kts
- + src/R/packages/DropSeq.dropulation/.Rbuildignore
- + src/R/packages/DropSeq.dropulation/DESCRIPTION
- + src/R/packages/DropSeq.dropulation/DropSeq.dropulation.Rproj
- + src/R/packages/DropSeq.dropulation/LICENSE
- + src/R/packages/DropSeq.dropulation/LICENSE.md
- + src/R/packages/DropSeq.dropulation/NAMESPACE
- + src/R/packages/DropSeq.dropulation/R/DonorAssignmentStandardAnalysis.R
- + src/R/packages/DropSeq.dropulation/R/DropSeq.dropulation-package.R


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/0fe09beff8b9249df11b37b45189a0229aa99048...551ad6d9b69a3deb3f182479d6c48d0325595b45

-- 
View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/0fe09beff8b9249df11b37b45189a0229aa99048...551ad6d9b69a3deb3f182479d6c48d0325595b45
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