[med-svn] [Git][med-team/seqan2][upstream] New upstream version 2.5.0~rc2+dfsg

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch upstream at Debian Med / seqan2


Commits:
841d856a by Michael R. Crusoe at 2024-08-16T13:03:51+02:00
New upstream version 2.5.0~rc2+dfsg
- - - - -


30 changed files:

- apps/fiona/CMakeLists.txt
- apps/mason2/CMakeLists.txt
- apps/mason2/sequencing.h
- apps/mason2/simulate_454.cpp
- apps/mason2/simulate_illumina.cpp
- apps/mason2/tests/generate_outputs.sh
- − apps/mason2/tests/genome.test1.fa
- − apps/mason2/tests/genome.test2.fa
- apps/mason2/tests/adeno_virus.fa → apps/mason2/tests/input/adeno_virus.fa
- apps/mason2/tests/adeno_virus.fa.fai → apps/mason2/tests/input/adeno_virus.fa.fai
- apps/mason2/tests/random.fasta → apps/mason2/tests/input/random.fasta
- apps/mason2/tests/random.fasta.fai → apps/mason2/tests/input/random.fasta.fai
- apps/mason2/tests/genome.test1.fasta → apps/mason2/tests/libc++/genome.test1.fasta
- apps/mason2/tests/genome.test1.stderr → apps/mason2/tests/libc++/genome.test1.stderr
- apps/mason2/tests/genome.test1.stdout → apps/mason2/tests/libc++/genome.test1.stdout
- apps/mason2/tests/genome.test2.fasta → apps/mason2/tests/libc++/genome.test2.fasta
- apps/mason2/tests/genome.test2.stderr → apps/mason2/tests/libc++/genome.test2.stderr
- apps/mason2/tests/genome.test2.stdout → apps/mason2/tests/libc++/genome.test2.stdout
- apps/mason2/tests/materializer.random_var1.stderr → apps/mason2/tests/libc++/materializer.random_var1.stderr
- apps/mason2/tests/materializer.random_var1.stdout → apps/mason2/tests/libc++/materializer.random_var1.stdout
- apps/mason2/tests/materializer.random_var2.stderr → apps/mason2/tests/libc++/materializer.random_var2.stderr
- apps/mason2/tests/materializer.random_var2.stdout → apps/mason2/tests/libc++/materializer.random_var2.stdout
- apps/mason2/tests/methylation.test2.stderr → apps/mason2/tests/libc++/methylation.test1.stderr
- apps/mason2/tests/methylation.test1.stdout → apps/mason2/tests/libc++/methylation.test1.stdout
- + apps/mason2/tests/libc++/random_meth1.fasta
- apps/mason2/tests/random_meth1.fasta.fai → apps/mason2/tests/libc++/random_meth1.fasta.fai
- + apps/mason2/tests/libc++/random_var1.fasta
- + apps/mason2/tests/libc++/random_var1.vcf
- + apps/mason2/tests/libc++/random_var1.vcf.stderr
- apps/mason2/tests/random_var1.vcf.stdout → apps/mason2/tests/libc++/random_var1.vcf.stdout


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/seqan2/-/commit/841d856a472bdfdde5c24c4cfa0cff4b3847eac8

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View it on GitLab: https://salsa.debian.org/med-team/seqan2/-/commit/841d856a472bdfdde5c24c4cfa0cff4b3847eac8
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