[med-svn] [Git][med-team/seqan2][debian/experimental] 8 commits: release to experimental

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch debian/experimental at Debian Med / seqan2


Commits:
6b3f66b7 by Michael R. Crusoe at 2024-08-16T12:47:46+02:00
release to experimental

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25802d1e by Michael R. Crusoe at 2024-08-16T13:03:47+02:00
routine-update: New upstream version

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841d856a by Michael R. Crusoe at 2024-08-16T13:03:51+02:00
New upstream version 2.5.0~rc2+dfsg
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e5d79f79 by Michael R. Crusoe at 2024-08-16T13:04:19+02:00
Update upstream source from tag 'upstream/2.5.0_rc2+dfsg'

Update to upstream version '2.5.0~rc2+dfsg'
with Debian dir f66cdc4716d196d159eb9201c046c465222f1eb0
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8515db7d by Michael R. Crusoe at 2024-08-16T13:06:49+02:00
refreshed the patches

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703b22ab by Michael R. Crusoe at 2024-08-16T13:20:26+02:00
Resume building razers{,3} everywhere.

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636843af by Michael R. Crusoe at 2024-08-16T13:20:26+02:00
d/rules: According to upstream, solution_online_search_finder.cpp works again, so stop deleting that test

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2444cde9 by Michael R. Crusoe at 2024-08-16T13:20:26+02:00
routine-update: Ready to upload to experimental

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30 changed files:

- apps/fiona/CMakeLists.txt
- apps/mason2/CMakeLists.txt
- apps/mason2/sequencing.h
- apps/mason2/simulate_454.cpp
- apps/mason2/simulate_illumina.cpp
- apps/mason2/tests/generate_outputs.sh
- − apps/mason2/tests/genome.test1.fa
- − apps/mason2/tests/genome.test2.fa
- apps/mason2/tests/adeno_virus.fa → apps/mason2/tests/input/adeno_virus.fa
- apps/mason2/tests/adeno_virus.fa.fai → apps/mason2/tests/input/adeno_virus.fa.fai
- apps/mason2/tests/random.fasta → apps/mason2/tests/input/random.fasta
- apps/mason2/tests/random.fasta.fai → apps/mason2/tests/input/random.fasta.fai
- apps/mason2/tests/genome.test1.fasta → apps/mason2/tests/libc++/genome.test1.fasta
- apps/mason2/tests/genome.test1.stderr → apps/mason2/tests/libc++/genome.test1.stderr
- apps/mason2/tests/genome.test1.stdout → apps/mason2/tests/libc++/genome.test1.stdout
- apps/mason2/tests/genome.test2.fasta → apps/mason2/tests/libc++/genome.test2.fasta
- apps/mason2/tests/genome.test2.stderr → apps/mason2/tests/libc++/genome.test2.stderr
- apps/mason2/tests/genome.test2.stdout → apps/mason2/tests/libc++/genome.test2.stdout
- apps/mason2/tests/materializer.random_var1.stderr → apps/mason2/tests/libc++/materializer.random_var1.stderr
- apps/mason2/tests/materializer.random_var1.stdout → apps/mason2/tests/libc++/materializer.random_var1.stdout
- apps/mason2/tests/materializer.random_var2.stderr → apps/mason2/tests/libc++/materializer.random_var2.stderr
- apps/mason2/tests/materializer.random_var2.stdout → apps/mason2/tests/libc++/materializer.random_var2.stdout
- apps/mason2/tests/methylation.test2.stderr → apps/mason2/tests/libc++/methylation.test1.stderr
- apps/mason2/tests/methylation.test1.stdout → apps/mason2/tests/libc++/methylation.test1.stdout
- + apps/mason2/tests/libc++/random_meth1.fasta
- apps/mason2/tests/random_meth1.fasta.fai → apps/mason2/tests/libc++/random_meth1.fasta.fai
- + apps/mason2/tests/libc++/random_var1.fasta
- + apps/mason2/tests/libc++/random_var1.vcf
- + apps/mason2/tests/libc++/random_var1.vcf.stderr
- apps/mason2/tests/random_var1.vcf.stdout → apps/mason2/tests/libc++/random_var1.vcf.stdout


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/seqan2/-/compare/ec24a1129fb17b29a68417f0c131360d26810b24...2444cde9fae413a756e2c1590858b6e95689e199

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View it on GitLab: https://salsa.debian.org/med-team/seqan2/-/compare/ec24a1129fb17b29a68417f0c131360d26810b24...2444cde9fae413a756e2c1590858b6e95689e199
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