[med-svn] [Git][med-team/trinityrnaseq][master] 5 commits: routine-update: New upstream version

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq


Commits:
6cb1fcde by Michael R. Crusoe at 2024-08-21T16:47:15+02:00
routine-update: New upstream version

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ae0404ed by Michael R. Crusoe at 2024-08-21T16:47:23+02:00
New upstream version 2.15.2+dfsg
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c12941fa by Michael R. Crusoe at 2024-08-21T16:48:26+02:00
Update upstream source from tag 'upstream/2.15.2+dfsg'

Update to upstream version '2.15.2+dfsg'
with Debian dir 5012689404eac0367150d78438461ceb2050d40d
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19d5c539 by Michael R. Crusoe at 2024-08-21T16:59:37+02:00
Delete patch R_4.2_fix, it was applied upstream.

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27538d9c by Michael R. Crusoe at 2024-08-21T23:59:34+02:00
routine-update: Ready to upload to unstable

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20 changed files:

- Analysis/DifferentialExpression/PtR
- Analysis/DifferentialExpression/R/heatmap.3.R
- + Analysis/DifferentialExpression/dexseq_given_bams.pl
- Analysis/DifferentialExpression/run_GOseq.pl
- + Analysis/DifferentialExpression/sum_tech_replicates.pl
- Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
- Changelog.txt
- Docker/Dockerfile
- Docker/README.md
- README.md
- Trinity
- debian/changelog
- − debian/patches/R_4.2_fix
- debian/patches/fix-gcc-10.patch
- debian/patches/fix_system_paths
- debian/patches/series
- trinity-plugins/ParaFly/Makefile
- trinity-plugins/ParaFly/bin/ParaFly
- trinity-plugins/ParaFly/config.log
- trinity-plugins/ParaFly/config.status


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/e9db4e1a36dd70f857dcfb7245d08fcf255f7268...27538d9c4f7409b8ce246a71f4c620a4c2457b8a

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View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/e9db4e1a36dd70f857dcfb7245d08fcf255f7268...27538d9c4f7409b8ce246a71f4c620a4c2457b8a
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