[med-svn] [Git][med-team/centrifuge][master] 10 commits: New upstream version 1.0.4.1

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / centrifuge


Commits:
fea1ee6e by Étienne Mollier at 2024-08-25T16:12:48+02:00
New upstream version 1.0.4.1
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a7ea5a78 by Étienne Mollier at 2024-08-25T16:12:50+02:00
Update upstream source from tag 'upstream/1.0.4.1'

Update to upstream version '1.0.4.1'
with Debian dir 7135a2a10d93e2d1a8b78561158ff996e5613b70
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5046bdb9 by Étienne Mollier at 2024-08-25T16:13:46+02:00
d/control: add myself to uploaders.

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5e89d8dd by Étienne Mollier at 2024-08-25T16:14:07+02:00
d/control: declare compliance to standards version 4.7.0.

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08d231c8 by Étienne Mollier at 2024-08-25T16:45:40+02:00
d/s/lintian-overrides: flag false positive missing source.

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02a2597f by Étienne Mollier at 2024-08-25T16:46:02+02:00
no_msse2.patch: unfuzz.

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661a5940 by Étienne Mollier at 2024-08-25T16:54:10+02:00
fix_auto_ptr_usage_in_gcc-7.patch: delete: applied upstream.

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18e2e1e5 by Étienne Mollier at 2024-08-25T16:58:12+02:00
0002-Fix-build-with-rank.patch: apparently not needed anymore.

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7b12254d by Étienne Mollier at 2024-08-25T17:03:08+02:00
d/copyright: refer to the versioned GPL-3 file.

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ae589c52 by Étienne Mollier at 2024-08-25T17:03:55+02:00
Ready for upload to unstable.

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27 changed files:

- MANUAL
- MANUAL.markdown
- Makefile
- README.md
- VERSION
- aln_sink.h
- bt2_idx.h
- bt2_io.h
- centrifuge
- centrifuge-BuildSharedSequence.pl
- centrifuge-download
- centrifuge-kreport
- centrifuge-promote
- centrifuge.cpp
- centrifuge_build.cpp
- centrifuge_inspect.cpp
- classifier.h
- debian/changelog
- debian/control
- debian/copyright
- − debian/patches/0002-Fix-build-with-rank.patch
- − debian/patches/fix_auto_ptr_usage_in_gcc-7.patch
- debian/patches/no_msse2.patch
- debian/patches/series
- debian/source/lintian-overrides
- diff_sample.h
- doc/index.shtml


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/centrifuge/-/compare/fe642fb182fbad51051381470b102b7577cb7cc6...ae589c52d70d2f8a57870662183f0fa55aeebb38

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View it on GitLab: https://salsa.debian.org/med-team/centrifuge/-/compare/fe642fb182fbad51051381470b102b7577cb7cc6...ae589c52d70d2f8a57870662183f0fa55aeebb38
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