[med-svn] [Git][med-team/rambo-k][master] 3 commits: Fix typo Closes: #1087042

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / rambo-k


Commits:
2e76e1f2 by Andreas Tille at 2024-12-11T15:11:09+01:00
Fix typo Closes: #1087042

- - - - -
6ee396a7 by Andreas Tille at 2024-12-11T15:11:22+01:00
Standards-Version: 4.7.0 (routine-update)

- - - - -
3651842c by Andreas Tille at 2024-12-11T15:13:56+01:00
routine-update: Ready to upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + debian/patches/python3.12-syntax.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+rambo-k (1.21+dfsg-5) unstable; urgency=medium
+
+  * Fix typo
+    Closes: #1087042
+  * Standards-Version: 4.7.0 (routine-update)
+
+ -- Andreas Tille <tille at debian.org>  Wed, 11 Dec 2024 15:11:54 +0100
+
 rambo-k (1.21+dfsg-4) unstable; urgency=medium
 
   * Fix watch file


=====================================
debian/control
=====================================
@@ -10,7 +10,7 @@ Build-Depends: debhelper-compat (= 13),
                python3-all,
                libcommons-cli-java,
                liblog4j1.2-java
-Standards-Version: 4.6.0
+Standards-Version: 4.7.0
 Vcs-Browser: https://salsa.debian.org/med-team/rambo-k
 Vcs-Git: https://salsa.debian.org/med-team/rambo-k.git
 Homepage: http://rambok.sourceforge.net/


=====================================
debian/patches/python3.12-syntax.patch
=====================================
@@ -0,0 +1,16 @@
+Description: Fix typo
+Bug-Debian: https://bugs.debian.org/1087042
+Author: Andreas Tille <tille at debian.org>
+Last-Update: 2024-06-11
+
+--- a/RAMBOK.py
++++ b/RAMBOK.py
+@@ -145,7 +145,7 @@ def main():
+     parser.add_argument('-g', '--gapsize', help='Estimated size of gapsize in case of paired end reads, default = 1', default=1, required=False)
+     parser.add_argument('-c', '--cutoff_lower', help='Lower cutoff:  Output only reads with a score lower than or equal to this value, use m1 for -1')
+     parser.add_argument('-C', '--cutoff_higher', help='Higher cutoff: Output only reads with a score higher than or equal to this value, use m1 for -1')
+-    parser.add_argument('-d', '--delete_temp', help='\Delete temporary files. Calculations will start from beginning next time.', action='store_true', default=False)
++    parser.add_argument('-d', '--delete_temp', help='Delete temporary files. Calculations will start from beginning next time.', action='store_true', default=False)
+     parser.add_argument('-f', '--filetype', help='Type of your input reads. fasta or fastq, default = fastq', default='fastq', required=False)
+     args = parser.parse_args()
+     name1 = args.name1


=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
 python3.patch
+python3.12-syntax.patch



View it on GitLab: https://salsa.debian.org/med-team/rambo-k/-/compare/c79f516eacd617e43c1074393c9167a64c004271...3651842cc8aecbe8a4a592c09098422934e4b4e3

-- 
View it on GitLab: https://salsa.debian.org/med-team/rambo-k/-/compare/c79f516eacd617e43c1074393c9167a64c004271...3651842cc8aecbe8a4a592c09098422934e4b4e3
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