[med-svn] [Git][med-team/sortmerna][master] Fix Python3.12 string syntax Closes: #1087092

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / sortmerna


Commits:
cae3d43e by Andreas Tille at 2024-12-11T17:27:21+01:00
Fix Python3.12 string syntax Closes: #1087092

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/pyhon3.12-syntax.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+sortmerna (4.3.7-2) UNRELEASED; urgency=medium
+
+  * Fix Python3.12 string syntax
+    Closes: #1087092
+
+ -- Andreas Tille <tille at debian.org>  Wed, 11 Dec 2024 17:26:57 +0100
+
 sortmerna (4.3.7-1) unstable; urgency=medium
 
   * New upstream version 4.3.7


=====================================
debian/patches/pyhon3.12-syntax.patch
=====================================
@@ -0,0 +1,19 @@
+Description: Fix Python3.12 string syntax
+Bug-Debian: https://bugs.debian.org/1087092
+Author: Andreas Tille <tille at debian.org>
+Last-Update: 2024-06-11
+
+--- a/scripts/run.py
++++ b/scripts/run.py
+@@ -255,9 +255,9 @@ def parse_log(fpath, logd={}):
+             elif logd['results']['num_denovo'][0] in line:
+                 logd['results']['num_denovo'][1] = int((re.split(' = ', line)[1]).strip())
+             elif logd['results']['num_hits'][0] in line:
+-                logd['results']['num_hits'][1] = int((re.split(' = | \(', line)[1]).strip())
++                logd['results']['num_hits'][1] = int((re.split(r' = | \(', line)[1]).strip())
+             elif logd['results']['num_fail'][0] in line:
+-                logd['results']['num_fail'][1] = int((re.split(' = | \(', line)[1]).strip())
++                logd['results']['num_fail'][1] = int((re.split(r' = | \(', line)[1]).strip())
+             elif logd['num_id_cov'][0] in line:
+                 # line: '..thresholds = 44223 (44.22)'
+                 val = line.split('=')[1]


=====================================
debian/patches/series
=====================================
@@ -1,2 +1,3 @@
 concurrentqueue.h.patch
 gcc-13.patch
+pyhon3.12-syntax.patch



View it on GitLab: https://salsa.debian.org/med-team/sortmerna/-/commit/cae3d43e1a978390e0d16434b00323189933015b

-- 
View it on GitLab: https://salsa.debian.org/med-team/sortmerna/-/commit/cae3d43e1a978390e0d16434b00323189933015b
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