[med-svn] [Git][med-team/sra-sdk][master] 4 commits: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / sra-sdk


Commits:
af5df5e4 by Andreas Tille at 2024-12-12T11:59:48+01:00
New upstream version

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1d1abc24 by Andreas Tille at 2024-12-12T11:59:50+01:00
New upstream version 3.1.1+dfsg
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155690ad by Andreas Tille at 2024-12-12T12:00:21+01:00
Update upstream source from tag 'upstream/3.1.1+dfsg'

Update to upstream version '3.1.1+dfsg'
with Debian dir 003bcf05abd78ec0a6ae9a07e1f3c6b7faa4e136
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6258bb16 by Andreas Tille at 2024-12-12T12:23:27+01:00
Adapt patches, Note: It seems we need to mark several new patches inside tools/external/sra-search/test/CMakeLists.txt "online" !

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30 changed files:

- CHANGES.md
- README.md
- build/Makefile.env
- build/Makefile.vers
- build/docker/Makefile
- build/env.cmake
- build/install.sh
- debian/changelog
- debian/patches/label_online_tests.patch
- debian/patches/link_vdb_dynamically.patch
- debian/patches/prefer_dynamic_libraries.patch
- debian/patches/python3
- debian/patches/set_explicit_path_to_schemata.patch
- debian/patches/support_libre2-11.patch
- debian/patches/use_c_locale_for_comma.patch
- debian/patches/use_soversions.patch
- libs/ascp/CMakeLists.txt
- + libs/ascp/bsd/ascp-path.c
- ngs/CHANGES.md
- ngs/ngs-bam/Makefile.vers
- ngs/ngs-java/Makefile.vers
- ngs/ngs-java/examples/CMakeLists.txt
- ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java
- ngs/ngs-python/Makefile.vers
- ngs/ngs-python/examples/CMakeLists.txt
- ngs/ngs-python/ngs/LibManager.py
- ngs/ngs-sdk/Makefile.vers
- ngs/ngs-sdk/dispatch/version.h
- scripts/fix-sra-names.sh
- scripts/prepare-sra-names.sh


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/sra-sdk/-/compare/91c25e97d077a94420756db2acc0d835f565373c...6258bb16e9c22d43ec7c3ba46d7effbb7fd9238b

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View it on GitLab: https://salsa.debian.org/med-team/sra-sdk/-/compare/91c25e97d077a94420756db2acc0d835f565373c...6258bb16e9c22d43ec7c3ba46d7effbb7fd9238b
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