[med-svn] [Git][med-team/spades][master] 31 commits: Changing the paths of the files to remove when repacking

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / spades


Commits:
3788a5b6 by Pierre Gruet at 2024-06-27T09:27:46+02:00
Changing the paths of the files to remove when repacking

- - - - -
4a465de5 by Pierre Gruet at 2024-07-03T09:45:02+02:00
Updating the list of files to exclude when repacking

- - - - -
8a1add9c by Pierre Gruet at 2024-07-03T09:45:58+02:00
New upstream version 4.0.0+dfsg
- - - - -
1cb336a8 by Pierre Gruet at 2024-07-03T09:46:13+02:00
Update upstream source from tag 'upstream/4.0.0+dfsg'

Update to upstream version '4.0.0+dfsg'
with Debian dir c1f57e9abbb3108deb5cb2c0b564f41dbfd670e2
- - - - -
88b0f63e by Pierre Gruet at 2024-07-04T21:28:49+02:00
HTML pages are not shipped anymore in the source

- - - - -
ac7bfe6a by Pierre Gruet at 2024-07-04T21:40:04+02:00
Removing the now useless override of dh_installchangelogs

- - - - -
4ebd9bf9 by Pierre Gruet at 2024-07-04T21:45:54+02:00
Refreshing patches

- - - - -
5d777a51 by Pierre Gruet at 2024-07-04T21:46:37+02:00
Using googletest and spoa from their Debian packages

- - - - -
04910e36 by Pierre Gruet at 2024-07-04T21:46:53+02:00
Using bamtools from its Debian package

- - - - -
7bdad29e by Pierre Gruet at 2024-07-04T21:47:29+02:00
Updating paths in d/rules

- - - - -
6fadd285 by Pierre Gruet at 2024-07-04T21:47:44+02:00
Passing arguments to Boost from d/rules

- - - - -
2d606cba by Pierre Gruet at 2024-07-04T21:48:28+02:00
Using cuckoo and xxhash from their Debian packages

- - - - -
4b85f1dc by Pierre Gruet at 2024-07-04T21:49:03+02:00
Adding missing files to the CMakeLists.txt file of the samtools part

- - - - -
d05f2c2b by Pierre Gruet at 2024-07-04T21:49:29+02:00
Deactivating build-time tests of which test data have vanished from the source package

- - - - -
c4d408f5 by Pierre Gruet at 2024-07-04T21:50:27+02:00
Updating build-dependencies after some libs are drawn from the Debian packages instead of embedded copies

- - - - -
289551f0 by Pierre Gruet at 2024-07-04T21:51:11+02:00
Raising Standards version to 4.7.0 (no change)

- - - - -
985594cd by Pierre Gruet at 2024-07-04T21:53:08+02:00
Updating homepage URI

- - - - -
f09dd320 by Pierre Gruet at 2024-07-04T21:59:12+02:00
Removing obsolete Lintian override

- - - - -
c150ef4d by Pierre Gruet at 2024-07-04T22:02:07+02:00
Updating changelog

- - - - -
8d8ee977 by Pierre Gruet at 2024-07-04T22:03:52+02:00
Sorting the list of build-dependencies

- - - - -
93d06af4 by Pierre Gruet at 2024-07-04T22:13:12+02:00
Removing binary files when repacking

- - - - -
25389a94 by Pierre Gruet at 2024-07-04T22:13:58+02:00
New upstream version 4.0.0+dfsg1
- - - - -
9b32b735 by Pierre Gruet at 2024-07-04T22:14:13+02:00
Update upstream source from tag 'upstream/4.0.0+dfsg1'

Update to upstream version '4.0.0+dfsg1'
with Debian dir 49af7718eb8d7d07878833d76bf60607d9c6c55d
- - - - -
c2674fdd by Pierre Gruet at 2024-07-04T22:14:51+02:00
Updating changelog

- - - - -
a5e6a6d7 by Pierre Gruet at 2024-07-05T21:17:25+02:00
Rewriting d/copyright

- - - - -
b0782ba3 by Pierre Gruet at 2024-07-05T21:22:22+02:00
Adding a Lintian override for the embedded (modified) copy of Zlib

- - - - -
55f78536 by Pierre Gruet at 2024-07-05T22:14:32+02:00
Marking bwa_zlib patch as Forwarded: not-needed

- - - - -
b5984ac7 by Pierre Gruet at 2024-07-05T22:24:14+02:00
Fixing mistakes in d/copyright

- - - - -
a1ddbbe2 by Pierre Gruet at 2024-07-06T14:13:08+02:00
Using Debian-packaged joblib

- - - - -
d992049c by Pierre Gruet at 2024-07-06T14:13:17+02:00
Refreshing patch

- - - - -
0bb55666 by Pierre Gruet at 2024-07-06T14:14:29+02:00
Updating changelog

- - - - -


21 changed files:

- assembler/.clang-format → .clang-format
- .github/ISSUE_TEMPLATE/config.yml
- + .github/workflows/basic.yml
- − .github/workflows/basic.yml.disabled
- + .github/workflows/docs.yml
- + .github/workflows/full_runs.yml
- + .github/workflows/gcc.yml
- + .github/workflows/iontorrent.yml
- + .github/workflows/isolated.yml
- + .github/workflows/long_reads.yml
- + .github/workflows/mate_pairs.yml
- + .github/workflows/meta.yml
- + .github/workflows/release.yml
- + .github/workflows/rna.yml
- + .github/workflows/single_cell.yml
- − .github/workflows/spades-test.yml.disabled
- + .github/workflows/sra.yml
- + .github/workflows/update_saves.yml
- + .github/workflows/usecases.yml
- assembler/GPLv2.txt → GPLv2.txt
- + LICENSE


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/spades/-/compare/4ddf872cb4062f28a8457f72fae39df0d3ba88e8...0bb5566649a77ddaa9bcb374ffdfe74b62331aae

-- 
This project does not include diff previews in email notifications.
View it on GitLab: https://salsa.debian.org/med-team/spades/-/compare/4ddf872cb4062f28a8457f72fae39df0d3ba88e8...0bb5566649a77ddaa9bcb374ffdfe74b62331aae
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20240706/6af536e6/attachment-0001.htm>