[med-svn] [Git][med-team/mothur][master] 3 commits: New upstream version 1.48.1

[Tomasz Buchert (@tomasz)]

Tomasz Buchert pushed to branch master at Debian Med / mothur


Commits:
610156ad by Tomasz Buchert at 2024-06-02T10:15:44+02:00
New upstream version 1.48.1
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0c0c1fda by Tomasz Buchert at 2024-06-02T10:15:51+02:00
Update upstream source from tag 'upstream/1.48.1'

Update to upstream version '1.48.1'
with Debian dir f14bb0a39301fe1f96a8360f85e12b85dd14f6ea
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01f1324c by Tomasz Buchert at 2024-06-02T10:22:09+02:00
release and refresh patches

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30 changed files:

- Makefile
- Mothur.xcodeproj/project.pbxproj
- debian/changelog
- debian/control
- debian/patches/0002-Fix-include.patch
- debian/patches/add-hardening-opts.patch
- debian/patches/c++14.patch
- debian/patches/fix_linking.patch
- source/commands/countseqscommand.cpp
- source/commands/fastaqinfocommand.cpp
- source/commands/fastaqinfocommand.h
- source/commands/getmimarkspackagecommand.cpp
- source/commands/getoturepcommand.cpp
- source/commands/makecontigscommand.cpp
- source/commands/makecontigscommand.h
- source/commands/makefilecommand.cpp
- source/commands/makefilecommand.h
- source/commands/makegroupcommand.cpp
- source/commands/makegroupcommand.h
- source/commands/pcrseqscommand.cpp
- source/commands/preclustercommand.cpp
- source/commands/removelineagecommand.cpp
- source/commands/renameseqscommand.cpp
- source/commands/renameseqscommand.h
- source/commands/setcurrentcommand.cpp
- source/commands/sracommand.cpp
- source/commands/subsamplecommand.cpp
- source/datastructures/filefile.cpp
- source/datastructures/filefile.hpp
- source/datastructures/oligos.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/mothur/-/compare/15bd40b9d3323ec743660bb00d9852a1b20852b3...01f1324c8120146b88b872a1363125462e30d9bb

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