[med-svn] [Git][med-team/igv][master] 8 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / igv


Commits:
9ef090ca by Andreas Tille at 2024-03-08T08:46:41+01:00
routine-update: New upstream version

- - - - -
5df86c7d by Andreas Tille at 2024-03-08T08:46:43+01:00
New upstream version 2.17.3+dfsg
- - - - -
d2b4336c by Andreas Tille at 2024-03-08T08:47:12+01:00
Update upstream source from tag 'upstream/2.17.3+dfsg'

Update to upstream version '2.17.3+dfsg'
with Debian dir 434aa73bc01caacb09c9d497cb8bc3ccab69373d
- - - - -
57896610 by Andreas Tille at 2024-03-08T08:52:13+01:00
Refresh patches

- - - - -
dc9e4d07 by Andreas Tille at 2024-03-08T08:56:54+01:00
Fix download file name

- - - - -
53d08239 by Pierre Gruet at 2024-03-08T17:29:31+01:00
Fixing double @Ignore annotations in the tests

- - - - -
1e66afe6 by Andreas Tille at 2024-03-08T18:54:59+01:00
Merge branch '2.17.3'

- - - - -
27e1c8c6 by Andreas Tille at 2024-03-08T18:59:10+01:00
Upload to unstable

- - - - -


30 changed files:

- README.md
- debian/changelog
- debian/patches/omit_aws_stuff.patch
- debian/patches/skip_tests_network.patch
- debian/patches/using_home_made_icons.patch
- scripts/igv.command
- scripts/igv.sh
- src/main/java/org/broad/igv/feature/genome/ChromAliasBB.java
- src/main/java/org/broad/igv/feature/genome/CytobandMap.java
- src/main/java/org/broad/igv/feature/genome/CytobandSource.java
- src/main/java/org/broad/igv/feature/genome/CytobandSourceBB.java
- src/main/java/org/broad/igv/feature/genome/Genome.java
- src/main/java/org/broad/igv/prefs/PreferencesManager.java
- src/main/java/org/broad/igv/sam/AlignmentRenderer.java
- src/main/java/org/broad/igv/sam/AlignmentTrackMenu.java
- src/main/java/org/broad/igv/sam/SAMAlignment.java
- src/main/java/org/broad/igv/sam/SupplementaryAlignment.java
- src/main/java/org/broad/igv/sam/mods/BaseModificationUtils.java
- src/main/java/org/broad/igv/sashimi/SashimiContentPane.java
- src/main/java/org/broad/igv/sashimi/SashimiPlot.java
- src/main/java/org/broad/igv/track/TrackLoader.java
- src/main/java/org/broad/igv/ucsc/bb/BBDataSource.java
- src/main/java/org/broad/igv/ucsc/bb/BBFeatureSource.java
- src/main/java/org/broad/igv/ucsc/bb/BBFile.java
- src/main/java/org/broad/igv/ui/IGVMenuBar.java
- src/main/java/org/broad/igv/ui/action/LoadFromURLMenuAction.java
- + src/main/java/org/broad/igv/ui/action/UCSCGenArkAction.java
- src/main/java/org/broad/igv/ui/commandbar/ChromosomeComboBox.java
- src/main/java/org/broad/igv/ui/commandbar/IGVCommandBar.java
- src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/4937a59580e495f657c1292b620b7f4a131bde18...27e1c8c6a1616977006883426aacc730352d127e

-- 
View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/4937a59580e495f657c1292b620b7f4a131bde18...27e1c8c6a1616977006883426aacc730352d127e
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20240308/af778ecd/attachment.htm>