[med-svn] [Git][med-team/spoa][master] 9 commits: routine-update: New upstream version

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / spoa


Commits:
eb6042bb by Michael R. Crusoe at 2024-03-21T12:23:30+01:00
routine-update: New upstream version

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ccf4f105 by Michael R. Crusoe at 2024-03-21T12:23:32+01:00
New upstream version 4.1.4
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771605f3 by Michael R. Crusoe at 2024-03-21T12:23:32+01:00
Update upstream source from tag 'upstream/4.1.4'

Update to upstream version '4.1.4'
with Debian dir d5178e73097ce74a9f1693a353ab62b81ab4eb56
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70671294 by Michael R. Crusoe at 2024-03-21T12:23:32+01:00
routine-update: Standards-Version: 4.6.2

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d99344ed by Michael R. Crusoe at 2024-03-21T12:33:05+01:00
Refresh patches.

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6990b2df by Michael R. Crusoe at 2024-03-21T12:39:35+01:00
d/rules: set optimize=-lto. Closes: #1015667

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eca3d170 by Michael R. Crusoe at 2024-03-21T12:55:37+01:00
d/libspoa7.0.0.symbols.amd64: add new symbols.

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e2921dcc by Michael R. Crusoe at 2024-03-21T12:55:37+01:00
d/source/lintian-overrides: removed, no longer needed.

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8fe159c5 by Michael R. Crusoe at 2024-03-21T12:55:37+01:00
routine-update: Ready to upload to unstable

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30 changed files:

- + .github/workflows/spoa.yml
- .gitignore
- − .travis.yml
- CMakeLists.txt
- README.md
- debian/changelog
- debian/control
- debian/libspoa7.0.0.symbols.amd64
- debian/patches/shared_and_static.patch
- debian/patches/use_debian_packaged_libs.patch
- debian/rules
- − debian/source/lintian-overrides
- + include/meson.build
- include/spoa/graph.hpp
- include/spoa/spoa.hpp
- + include/spoa/version.hpp
- + meson.build
- + meson_options.txt
- include/spoa/architectures.hpp → src/architectures.hpp
- src/graph.cpp
- src/main.cpp
- + src/meson.build
- src/simd_alignment_engine.hpp
- src/simd_alignment_engine_dispatcher.cpp
- src/simd_alignment_engine_implementation.hpp
- + src/spoa_config.h.in
- + src/version.cpp
- + subprojects/bioparser.wrap
- + subprojects/biosoup.wrap
- + subprojects/cereal.wrap


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/spoa/-/compare/2f8203b6dc636606e329cfd2b5ace38b7efc3a4c...8fe159c574e33a4f3eb574d1c1ba23d64a6d0117

-- 
View it on GitLab: https://salsa.debian.org/med-team/spoa/-/compare/2f8203b6dc636606e329cfd2b5ace38b7efc3a4c...8fe159c574e33a4f3eb574d1c1ba23d64a6d0117
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