[med-svn] [Git][med-team/kallisto][master] 8 commits: Upstream has forked bifrost, use their copy instead.

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / kallisto


Commits:
5c69de56 by Michael R. Crusoe at 2024-03-27T11:40:54+01:00
Upstream has forked bifrost, use their copy instead.

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f1dc2a4a by Michael R. Crusoe at 2024-03-27T11:42:14+01:00
New upstream version 0.50.1+dfsg
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04e967ee by Michael R. Crusoe at 2024-03-27T11:42:18+01:00
Update upstream source from tag 'upstream/0.50.1+dfsg'

Update to upstream version '0.50.1+dfsg'
with Debian dir e1c4768a2595b84f0df81fcd64bf8e4180f0864b
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b15d94a1 by Michael R. Crusoe at 2024-03-27T11:44:19+01:00
exclude generate HTML docs of bifrost

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ad903f06 by Michael R. Crusoe at 2024-03-27T11:44:56+01:00
New upstream version 0.50.1+dfsg
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37dc5ba6 by Michael R. Crusoe at 2024-03-27T11:45:00+01:00
Update upstream source from tag 'upstream/0.50.1+dfsg'

Update to upstream version '0.50.1+dfsg'
with Debian dir 893437f9425ba2b444ea04ad15920378d2d03720
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148552cc by Michael R. Crusoe at 2024-03-27T12:05:10+01:00
bifrost patch adjustments

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7d125706 by Michael R. Crusoe at 2024-03-27T12:10:13+01:00
d/rules: need cmake option needed: USE_BAM.

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16 changed files:

- debian/changelog
- debian/copyright
- debian/patches/htslib1.3
- debian/patches/series
- debian/patches/use_debian_packaged_bifrost.patch
- debian/patches/use_debian_packaged_htslib.patch
- debian/rules
- + ext/bifrost/.gitignore
- + ext/bifrost/.gitmodules
- + ext/bifrost/CMakeLists.txt
- + ext/bifrost/Changelog.md
- + ext/bifrost/Doxyfile
- + ext/bifrost/LICENSE
- + ext/bifrost/README.md
- + ext/bifrost/doc/doxygen/doxygen_sqlite3.db
- + ext/bifrost/doc/doxygen/latex/ColorSet_8hpp.tex


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/compare/5cd86026997bdebf5c85930aa2156c2598836219...7d125706ac5f607a89e1b3fa6533f9c93b0a0919

-- 
View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/compare/5cd86026997bdebf5c85930aa2156c2598836219...7d125706ac5f607a89e1b3fa6533f9c93b0a0919
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