[med-svn] [Git][med-team/libvcflib][master] 18 commits: New upstream version 1.0.10+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / libvcflib


Commits:
853b3b0a by Étienne Mollier at 2024-04-27T09:57:08+02:00
New upstream version 1.0.10+dfsg
- - - - -
c84f232d by Étienne Mollier at 2024-04-27T09:57:24+02:00
Update upstream source from tag 'upstream/1.0.10+dfsg'

Update to upstream version '1.0.10+dfsg'
with Debian dir 46760033f209608e6e171e00158f8814209ed9b7
- - - - -
b0f99949 by Étienne Mollier at 2024-04-28T15:41:24+02:00
update changelog

- - - - -
a52f2473 by Étienne Mollier at 2024-05-04T11:52:12+02:00
d/watch: fix capture of pre-releases.

Somehow, the scraping of Github tags page tended to meddle with the
version capture, so this change introduces a switch to git mode, in
addition to modifications to version mangling.

- - - - -
c9a8fd0c by Étienne Mollier at 2024-05-04T11:55:07+02:00
update changelog.

- - - - -
c62d1664 by Étienne Mollier at 2024-05-04T11:56:11+02:00
New upstream version 1.0.11~pre2+dfsg
- - - - -
6b929119 by Étienne Mollier at 2024-05-04T11:56:26+02:00
Update upstream source from tag 'upstream/1.0.11_pre2+dfsg'

Update to upstream version '1.0.11~pre2+dfsg'
with Debian dir 22bde284108880cc626fc27428eaf75ea361923a
- - - - -
16774a3d by Étienne Mollier at 2024-05-04T14:14:01+02:00
no_fsom patch: unfuzz.

- - - - -
29239071 by Étienne Mollier at 2024-05-04T14:14:27+02:00
shared_lib.patch: unfuzz.

- - - - -
faabd684 by Étienne Mollier at 2024-05-04T14:14:47+02:00
tabix_linking.patch: unfuzz.

- - - - -
eeb92086 by Étienne Mollier at 2024-05-04T14:15:24+02:00
use_debian_packaged_fastahack.patch: refresh.

- - - - -
7bd6e34c by Étienne Mollier at 2024-05-04T14:15:48+02:00
use_debian_packaged_libssw.patch: refresh.

- - - - -
ba24bdae by Étienne Mollier at 2024-05-04T14:16:16+02:00
use_debian_packaged_smithwaterman.patch: unfuzz.

- - - - -
4bd8eea2 by Étienne Mollier at 2024-05-04T14:16:50+02:00
wfa2_linking: unfuzz.

- - - - -
161e116f by Étienne Mollier at 2024-05-04T15:04:41+02:00
cmakelists-fixups.patch: new: fix a couple of configure issues.

- - - - -
75c791da by Étienne Mollier at 2024-05-04T15:05:44+02:00
d/libvcflib-tools.install: remove now missing vcfallelicprimitives.

- - - - -
d3d48ece by Étienne Mollier at 2024-05-04T15:06:58+02:00
d/libvcflib-dev.install: adjust to new target directory.

- - - - -
60790d86 by Étienne Mollier at 2024-05-04T15:09:02+02:00
update changelog.

- - - - -


30 changed files:

- .github/workflows/ci_test.yml
- .gitmodules
- CMakeLists.txt
- README.md
- RELEASE_NOTES.md
- VERSION
- debian/changelog
- debian/libvcflib-dev.install
- debian/libvcflib-tools.install
- + debian/patches/cmakelists-fixups.patch
- debian/patches/no_fsom
- debian/patches/series
- debian/patches/shared_lib.patch
- debian/patches/tabix_linking
- debian/patches/use_debian_packaged_fastahack.patch
- debian/patches/use_debian_packaged_libssw.patch
- debian/patches/use_debian_packaged_smithwaterman.patch
- debian/patches/wfa2_linking
- debian/watch
- doc/abba-baba.md
- doc/bFst.md
- doc/dumpContigsFromHeader.md
- doc/genotypeSummary.md
- doc/hapLrt.md
- doc/iHS.md
- doc/meltEHH.md
- doc/normalize-iHS.md
- doc/pFst.md
- doc/pVst.md
- doc/permuteGPAT++.md


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libvcflib/-/compare/cb07a2e9d894b3e990deca87f0b356dc0610e69b...60790d862910ecea5323bd3c7d6e4410a1143a43

-- 
View it on GitLab: https://salsa.debian.org/med-team/libvcflib/-/compare/cb07a2e9d894b3e990deca87f0b356dc0610e69b...60790d862910ecea5323bd3c7d6e4410a1143a43
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20240504/df654ab1/attachment.htm>