[med-svn] [Git][med-team/hyphy][master] 5 commits: New upstream version 2.5.61+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / hyphy


Commits:
29675773 by Étienne Mollier at 2024-05-08T18:16:39+02:00
New upstream version 2.5.61+dfsg
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7d0522bb by Étienne Mollier at 2024-05-08T18:16:46+02:00
Update upstream source from tag 'upstream/2.5.61+dfsg'

Update to upstream version '2.5.61+dfsg'
with Debian dir f2757e47930a3b872cf135de7f24338c34f0bfe5
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27303cbb by Étienne Mollier at 2024-05-08T18:18:43+02:00
d/control: declare compliance to standards version 4.7.0.

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8a241c96 by Étienne Mollier at 2024-05-08T18:19:39+02:00
Unfuzz all patches.

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2b5188c6 by Étienne Mollier at 2024-05-08T18:47:44+02:00
update changelog with a note about autopkgtests failure.

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30 changed files:

- CMakeLists.txt
- debian/changelog
- debian/control
- debian/patches/rm_arch_specific_flags.patch
- debian/patches/set-zlib-after-setting-default-libs.patch
- debian/patches/use_debian_sqlite.patch
- res/TemplateBatchFiles/MSS-joint-fitter.bf
- res/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
- res/TemplateBatchFiles/SelectionAnalyses/FEL.bf
- res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
- res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
- res/TemplateBatchFiles/SeqAlignmentCodonShared.ibf
- res/TemplateBatchFiles/libv3/all-terms.bf
- res/TemplateBatchFiles/libv3/models/codon/MG_REV.bf
- res/TemplateBatchFiles/libv3/models/codon/MSS.bf
- res/TemplateBatchFiles/libv3/models/model_functions.bf
- res/TemplateBatchFiles/libv3/models/parameters.bf
- res/TemplateBatchFiles/libv3/tasks/alignments.bf
- res/TemplateBatchFiles/libv3/tasks/estimators.bf
- res/TemplateBatchFiles/libv3/tasks/mpi.bf
- res/TemplateBatchFiles/libv3/tasks/trees.bf
- src/core/alignment.cpp
- src/core/batchlanruntime.cpp
- src/core/formula.cpp
- src/core/fstring.cpp
- src/core/global_things.cpp
- src/core/include/defines.h
- src/core/include/formula.h
- src/core/include/likefunc.h
- src/core/include/matrix.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/f1e528d3386b9e930e0764f62e9d2ee7e0d9c5d9...2b5188c6e7af2a76283aaef586aca276c2d20e1d

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View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/f1e528d3386b9e930e0764f62e9d2ee7e0d9c5d9...2b5188c6e7af2a76283aaef586aca276c2d20e1d
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