[med-svn] [Git][med-team/snpeff][upstream] Import Upstream version 5.2.b+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch upstream at Debian Med / snpeff


Commits:
42370782 by Pierre Gruet at 2024-05-12T21:14:28+02:00
Import Upstream version 5.2.b+dfsg
- - - - -


30 changed files:

- .vscode/launch.json
- + config/snpEff.ENSEMBL_110.config
- + config/snpEff.ENSEMBL_BFMPP_57.config
- + config/snpEff.bundles.ENSEMBL_BFMPP_57.config
- config/snpEff.config
- config/snpEff.dbs.config
- config/snpEff.test.config
- docs/download/index.html
- + docs/images/coverage_hitogram.png
- docs/index.html
- docs/sitemap.xml.gz
- docs/snpeff/faq/index.html
- docs/snpeff/inputoutput/index.html
- docs/snpeff/outputsummary/index.html
- docs/versions.txt
- galaxy/tool-data/snpEff_genomes.loc
- galaxy/tool-data/snpEff_genomes.loc.sample
- − pcingola_cleanup.xml
- − pcingola_formatter.xml
- src/bds/download/downloadEnsemblBulk.bds
- src/bds/download/downloadGenome.bds
- src/bds/download/downloadMane.bds
- src/bds/make.bds
- src/docs/download.md
- + src/docs/images/coverage_hitogram.png
- src/docs/index.md
- src/docs/snpeff/faq.md
- src/docs/snpeff/inputoutput.md
- src/docs/snpeff/outputsummary.md
- src/main/java/org/snpeff/SnpEff.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/commit/4237078237a3adf6ebc45297563660676d020a86

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View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/commit/4237078237a3adf6ebc45297563660676d020a86
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