[med-svn] [Git][med-team/bbmap][master] 7 commits: New upstream version 39.11+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / bbmap


Commits:
a9e720c3 by Étienne Mollier at 2024-11-11T21:36:34+01:00
New upstream version 39.11+dfsg
- - - - -
cb8bdc15 by Étienne Mollier at 2024-11-11T21:36:43+01:00
Update upstream source from tag 'upstream/39.11+dfsg'

Update to upstream version '39.11+dfsg'
with Debian dir e8c070231b8261b5e285017eeb4cbec0b4d2a627
- - - - -
7ca74d8a by Étienne Mollier at 2024-11-11T22:25:30+01:00
d/m/bbduk.sh.1: freshen the manual page.

- - - - -
a44d43d3 by Étienne Mollier at 2024-11-11T22:40:46+01:00
d/m/reformat.sh.1: freshen the manual page.

- - - - -
fcf474fd by Étienne Mollier at 2024-11-11T23:00:23+01:00
d/m/bbmap.sh.1: refresh manual page.

- - - - -
93eca72b by Étienne Mollier at 2024-11-11T23:04:54+01:00
debug_symbols.patch: normalize Last-Update timestamp.

- - - - -
78ddc662 by Étienne Mollier at 2024-11-11T23:05:27+01:00
Ready for upload to unstable.

- - - - -


30 changed files:

- README.md
- bbduk.sh
- bbmerge.sh
- calcmem.sh
- calctruequality.sh
- current/align2/AbstractMapper.java
- current/align2/BBMap.java
- current/align2/BBMap5.java
- current/align2/BBMapAcc.java
- current/align2/BBMapPacBio.java
- current/align2/BBMapPacBioSkimmer.java
- current/align2/BBSplitter.java
- current/align2/GradeSamFile.java
- current/align2/MakeQualityHistogram.java
- current/align2/MakeRocCurve.java
- current/align2/PrintTime.java
- current/align2/QualityTools.java
- current/aligner/AllToAll.java
- current/aligner/MicroAligner.java
- current/aligner/MicroAligner2.java
- + current/aligner/SideChannel.java
- current/assemble/KmerCompressor.java
- current/assemble/Postfilter.java
- current/assemble/TadPipe.java
- current/assemble/Tadpole.java
- current/barcode/AnalyzeBarcodes.java
- current/barcode/Barcode.java
- current/barcode/CompareLabels.java
- current/barcode/CorrelateBarcodes.java
- current/barcode/CountBarcodes.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/e58409985fbc24875fcae3b1b8461642675e8778...78ddc662f275cdb50c353947df795b1ec3fff319

-- 
View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/e58409985fbc24875fcae3b1b8461642675e8778...78ddc662f275cdb50c353947df795b1ec3fff319
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20241111/896a0e88/attachment.htm>