[med-svn] [Git][med-team/htslib][master] 10 commits: New upstream version 1.21+ds

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / htslib


Commits:
55d2a996 by Étienne Mollier at 2024-11-12T22:36:15+01:00
New upstream version 1.21+ds
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4a159b4d by Étienne Mollier at 2024-11-12T22:36:17+01:00
Update upstream source from tag 'upstream/1.21+ds'

Update to upstream version '1.21+ds'
with Debian dir 12949e7c5325f02880a3c97c186d8f95a4f60038
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577ba0d8 by Étienne Mollier at 2024-11-12T22:45:39+01:00
cram_to_bam_export.patch: upstream exposed cram_to_bam.

Note that cram_to_bam is an internal symbol that should not be used
in normal situations.

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8933a454 by Étienne Mollier at 2024-11-12T22:47:29+01:00
d/patches/*: unfuzz patches.

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95ec4412 by Étienne Mollier at 2024-11-12T22:53:51+01:00
d/libhts3t64.symbols: record newly introduced symbols.

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8cb82333 by Étienne Mollier at 2024-11-12T22:55:03+01:00
fix_sequence_of_linked_libs.patch: normalise Last-Update.

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dae69141 by Étienne Mollier at 2024-11-12T22:58:38+01:00
d/libhts3t64.lintian-overrides: delete.

package-name-doesnt-match-sonames was now an unused override.

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fc84ff49 by Étienne Mollier at 2024-11-12T23:00:44+01:00
d/htslib-test.lintian-overrides: flag false positive documentation.

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f98bfe29 by Étienne Mollier at 2024-11-12T23:04:33+01:00
d/libhts-dev.lintian-overrides: new.

Hide the unstripped-static-library affecting libhts.a.  A comment in
d/rules suggests symbols are needed by reverse dependency sambamba.

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c9023836 by Étienne Mollier at 2024-11-12T23:08:35+01:00
d/changelog: ready for experimental upload.

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30 changed files:

- Makefile
- NEWS
- annot-tsv.1
- annot-tsv.c
- bgzip.1
- bgzip.c
- configure.ac
- cram/cram_decode.c
- cram/cram_decode.h
- cram/cram_encode.c
- cram/cram_external.c
- cram/cram_index.c
- cram/cram_io.c
- debian/changelog
- debian/htslib-test.lintian-overrides
- + debian/libhts-dev.lintian-overrides
- − debian/libhts3t64.lintian-overrides
- debian/libhts3t64.symbols
- − debian/patches/cram_to_bam_export.patch
- debian/patches/fix_float_precision
- debian/patches/fix_sequence_of_linked_libs.patch
- debian/patches/series
- debian/patches/trim-file-prefix.patch
- faidx.c
- header.c
- hfile.c
- hfile_libcurl.c
- hfile_s3_write.c
- hts.c
- hts_expr.c


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/htslib/-/compare/dc4a93bef378ecd7c80f5721c74d1401e218647b...c9023836e74797a70a7159f5a2272ae03454c413

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View it on GitLab: https://salsa.debian.org/med-team/htslib/-/compare/dc4a93bef378ecd7c80f5721c74d1401e218647b...c9023836e74797a70a7159f5a2272ae03454c413
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