[med-svn] [Git][med-team/cnvkit][upstream] New upstream version 0.9.11

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch upstream at Debian Med / cnvkit


Commits:
fe807ead by Michael R. Crusoe at 2024-11-15T10:53:36+01:00
New upstream version 0.9.11
- - - - -


30 changed files:

- .github/workflows/tests-tox.yaml
- .readthedocs.yaml
- docker/Dockerfile → Dockerfile
- README.rst
- cnvlib/__init__.py
- cnvlib/_version.py
- cnvlib/batch.py
- cnvlib/call.py
- cnvlib/cmdutil.py
- cnvlib/cnary.py
- cnvlib/commands.py
- cnvlib/core.py
- cnvlib/coverage.py
- cnvlib/export.py
- cnvlib/fix.py
- cnvlib/import_rna.py
- cnvlib/params.py
- cnvlib/reference.py
- cnvlib/reports.py
- cnvlib/rna.py
- cnvlib/segfilters.py
- cnvlib/segmentation/__init__.py
- cnvlib/segmentation/hmm.py
- cnvlib/vary.py
- + conda-env.yml
- + data/access-10kb.hg38.bed
- + data/refFlat_hg38.txt
- devtools/conda-recipe/meta.yaml
- doc/sex.rst
- pyproject.toml


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/cnvkit/-/commit/fe807eadaf563425325879e17a2acd9783b29e11

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View it on GitLab: https://salsa.debian.org/med-team/cnvkit/-/commit/fe807eadaf563425325879e17a2acd9783b29e11
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