[med-svn] [Git][med-team/ampliconnoise][master] 4 commits: d/rules: build i386 binaries with -ffloat-store.
Étienne Mollier (@emollier)
gitlab at salsa.debian.org
Mon Nov 18 21:03:59 GMT 2024
Étienne Mollier pushed to branch master at Debian Med / ampliconnoise
Commits:
744332c4 by Étienne Mollier at 2024-11-18T21:48:12+01:00
d/rules: build i386 binaries with -ffloat-store.
This fixes slignt result mismatches on i386 caught by autopkgtest.
- - - - -
e2b9e713 by Étienne Mollier at 2024-11-18T21:55:33+01:00
d/patches/*: normalize dep3 header, notably timestamps.
- - - - -
a37aa459 by Étienne Mollier at 2024-11-18T22:02:45+01:00
d/control: add myself to uploaders.
- - - - -
d9111378 by Étienne Mollier at 2024-11-18T22:03:30+01:00
d/changelog: ready for upload to unstable.
- - - - -
10 changed files:
- debian/changelog
- debian/control
- debian/patches/clang-ftbfs.patch
- debian/patches/fix-path-for-data.patch
- debian/patches/fix-segfault-on-non-fasta-input.patch
- debian/patches/fix_missing_header.patch
- debian/patches/fix_sequence_of_function_definitions.patch
- debian/patches/hardening.patch
- debian/patches/mayhem.patch
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -1,9 +1,16 @@
-ampliconnoise (1.29-14) UNRELEASED; urgency=medium
+ampliconnoise (1.29-14) unstable; urgency=medium
+ [ Andreas Tille ]
* Remove Tim Booth <tbooth at ceh.ac.uk> since address is bouncing
(Thank you for your work on this package, Tim)
- -- Andreas Tille <tille at debian.org> Mon, 16 Sep 2024 09:57:35 +0200
+ [ Étienne Mollier ]
+ * d/rules: build i386 binaries with -ffloat-store.
+ This fixes slignt result mismatches on i386 caught by autopkgtest.
+ * d/patches/*: normalize dep3 header, notably timestamps.
+ * d/control: add myself to uploaders.
+
+ -- Étienne Mollier <emollier at debian.org> Mon, 18 Nov 2024 22:02:59 +0100
ampliconnoise (1.29-13) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -1,7 +1,8 @@
Source: ampliconnoise
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Andreas Tille <tille at debian.org>,
- Pranav Ballaney <ballaneypranav at gmail.com>
+ Pranav Ballaney <ballaneypranav at gmail.com>,
+ Étienne Mollier <emollier at debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
=====================================
debian/patches/clang-ftbfs.patch
=====================================
@@ -1,8 +1,9 @@
Author: Arthur Marble <arthur at info9.net>
-Last-Update: Mon, 24 Feb 2014 19:06:10 -0600
+Last-Update: 2014-02-24
Bug-Debian: http://bugs.debian.org/740029
Description: Fix FTBFS with clang instead of gcc
-Forwarded: No (orphaned upstream)
+ The package is orphaned upstream, hence not forwarded.
+Forwarded: no
--- a/FCluster/FCluster.c
+++ b/FCluster/FCluster.c
=====================================
debian/patches/fix-path-for-data.patch
=====================================
@@ -1,14 +1,14 @@
Author: Tim Booth <tbooth at ceh.ac.uk>
-Origin: Specific to package
-Bug: None
Last-Update: 2011-04-28
-Forwarded: No (orphaned upstream)
+Forwarded: no
Description:
The upstream software is built so as to run from the build environment and look for
data in ../Data. In Debian the binaries belong in /usr/bin and the data belongs
in /usr/share. With this patch the binaries will run from any directory.
A better fix would be to allow setting of the Data directory via an environment variable
or a variable passed to MAKE at build time. This could be contributed back to upstream.
+ .
+ The package is orphaned upstream, hence not forwarded.
--- a/SeqNoise/SeqNoise.h
+++ b/SeqNoise/SeqNoise.h
=====================================
debian/patches/fix-segfault-on-non-fasta-input.patch
=====================================
@@ -2,9 +2,11 @@ Description: Some apps segfault when non-FASTA data is inputted, and this is fla
concern. I suspect there are still ways to segfault this app, but at least this fixes
an obvious crash.
Also fixes https://code.google.com/p/ampliconnoise/issues/detail?id=10
-Forwarded: No (orphaned upstream)
+ .
+ The package is orphaned upstream, hence not forwarded.
+Forwarded: no
Author: Tim Booth
-Last-Update: 2013-06-27 17:33:31 +0000
+Last-Update: 2013-06-27
--- a/FastaUnique/FastaUnique.c
+++ b/FastaUnique/FastaUnique.c
=====================================
debian/patches/fix_missing_header.patch
=====================================
@@ -1,8 +1,9 @@
Description: Add missing header file
+ The package is orphaned upstream, hence not forwarded.
Bug-Debian: https://bugs.debian.org/1066300
Author: Andreas Tille <tille at debian.org>
-Last-Update: Thu, 11 Apr 2024 09:06:57 +0200
-Forwarded: No (orphaned upstream)
+Last-Update: 2024-04-11
+Forwarded: no
--- a/NDist/NDist.c
+++ b/NDist/NDist.c
=====================================
debian/patches/fix_sequence_of_function_definitions.patch
=====================================
@@ -1,9 +1,12 @@
-Description: Fix the sequence of function definitions to make sure
- UpdateMinCacheForRow() is known before its first usage
+Description: fix sequence of function definitions
+ Fix the sequence of function definitions to make sure
+ UpdateMinCacheForRow() is known before its first usage.
+ .
+ This package is orphaned upstream, hence the patch not being forwarded.
Bug-Debian: https://bugs.debian.org/1066300
Author: Andreas Tille <tille at debian.org>
-Last-Update: Thu, 11 Apr 2024 09:06:57 +0200
-Forwarded: No (orphaned upstream)
+Last-Update: 2024-04-11
+Forwarded: no
--- a/FCluster/FCluster.c
+++ b/FCluster/FCluster.c
=====================================
debian/patches/hardening.patch
=====================================
@@ -1,6 +1,7 @@
Author: Andreas Tille <tille at debian.org>
Description: Propagate hardening options
-Forwarded: No (orphaned upstream)
+ The package is orphaned upstream, hence the patch is not forwarded.
+Forwarded: no
Last-Update: 2024-08-07
Reviewed-By: Étienne Mollier <emollier at debian.org>
=====================================
debian/patches/mayhem.patch
=====================================
@@ -1,10 +1,10 @@
Author: Andreas Tille <tille at debian.org>
-Last-Update: Fri, 18 Dec 2015 12:14:54 +0100
+Last-Update: 2015-12-18
Bug-Debian: https://bugs.debian.org/715593
https://bugs.debian.org/715594
-Description: Fix Mayhem issues by
- making reading fasta files more robust
-Forwarded: No (orphaned upstream)
+Description: Fix Mayhem issues by making reading fasta files more robust
+ The package is orphaned upstream, hence not forwarded.
+Forwarded: no
--- a/Perseus/Perseus.c
+++ b/Perseus/Perseus.c
=====================================
debian/rules
=====================================
@@ -4,12 +4,20 @@
# Uncomment this to turn on verbose mode.
#export DH_VERBOSE=1
+include /usr/share/dpkg/architecture.mk
+
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
# Override path as a way to hook mpicc
PATH := $(CURDIR)/debian/bin_override:${PATH}
export PATH
+# Compensate test result mismatches occurring on i386 only.
+ifeq ($(DEB_HOST_ARCH),i386)
+export DEB_CFLAGS_MAINT_APPEND=-ffloat-store
+export DEB_CXXFLAGS_MAINT_APPEND=-ffloat-store
+endif
+
%:
dh $@
View it on GitLab: https://salsa.debian.org/med-team/ampliconnoise/-/compare/2b9e7aa53745155050e2f12f0ec6f070b9e94e0a...d9111378102e7353ee72cd4e34cf6c18f9120991
--
View it on GitLab: https://salsa.debian.org/med-team/ampliconnoise/-/compare/2b9e7aa53745155050e2f12f0ec6f070b9e94e0a...d9111378102e7353ee72cd4e34cf6c18f9120991
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