[med-svn] [Git][med-team/seqan2][debian/experimental] 11 commits: New upstream version

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch debian/experimental at Debian Med / seqan2


Commits:
8348f4f3 by Michael R. Crusoe at 2024-11-23T00:18:08+01:00
New upstream version

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b2c20078 by Michael R. Crusoe at 2024-11-23T00:18:12+01:00
New upstream version 2.5.0~rc3+dfsg
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56ac8452 by Michael R. Crusoe at 2024-11-23T00:18:45+01:00
Update upstream source from tag 'upstream/2.5.0_rc3+dfsg'

Update to upstream version '2.5.0~rc3+dfsg'
with Debian dir 7d2931bafbfcad212db3e6840742f592b3fb0d01
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5f1b8ec3 by Michael R. Crusoe at 2024-11-23T00:18:45+01:00
Standards-Version: 4.7.0 (routine-update)

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824fc87d by Enrico Seiler at 2024-11-23T00:20:45+01:00
d/control: remove unneeded deps

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ef283a9d by Enrico Seiler at 2024-11-23T00:20:53+01:00
d/rules: strip path from seqan-apps, special options for salsa

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388b49a0 by Enrico Seiler at 2024-11-23T00:21:01+01:00
d/salsa-ci.yml: Skip arm64 crossbuild and reprotest, add env var for use by d/rules

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0834633f by Enrico Seiler at 2024-11-23T00:21:12+01:00
d/patches: refresh patches

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d16e75cb by Enrico Seiler at 2024-11-23T00:21:16+01:00
d/patches: remove forwarded patches

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de362962 by Enrico Seiler at 2024-11-23T00:21:23+01:00
d/patches: add patches from upstream

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955b1cbe by Enrico Seiler at 2024-11-23T00:21:29+01:00
routine-update: Ready to upload to experimental

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30 changed files:

- CMakeLists.txt
- README.md
- apps/fiona/CMakeLists.txt
- apps/mason2/CMakeLists.txt
- apps/ngs_roi/png_canvas.h
- apps/razers3/CMakeLists.txt
- apps/samcat/CMakeLists.txt
- apps/searchjoin/CMakeLists.txt
- apps/yara/CMakeLists.txt
- debian/changelog
- debian/control
- + debian/patches/0001-FIX-Typo.patch
- + debian/patches/0002-FIX-version-check-test-failing-if-program-is-missing.patch
- + debian/patches/0003-INFRA-Strip-build-paths-from-apps.patch
- − debian/patches/fix-version_check-test
- − debian/patches/python3
- debian/patches/series
- debian/patches/skip-some-apps-on-some-archs
- debian/patches/tweak_readmes
- debian/rules
- debian/salsa-ci.yml
- include/seqan/modifier/modifier_reverse.h
- include/seqan/sequence/string_packed.h
- manual/environment.yml
- manual/requirements.txt
- manual/source/Infrastructure/Use/FindSeqAnCMake.rst
- manual/source/conf.py
- tests/index/CMakeLists.txt
- tests/journaled_string_tree/CMakeLists.txt
- tests/parallel/CMakeLists.txt


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/seqan2/-/compare/65fdb5c1922c51440bc59cfb494080d64ed33973...955b1cbee7a0ef9a3623de3f7ea379f9c1caf3e2

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View it on GitLab: https://salsa.debian.org/med-team/seqan2/-/compare/65fdb5c1922c51440bc59cfb494080d64ed33973...955b1cbee7a0ef9a3623de3f7ea379f9c1caf3e2
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