[med-svn] [Git][med-team/bwa][master] 7 commits: routine-update: New upstream version

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / bwa


Commits:
34e233d4 by Michael R. Crusoe at 2024-09-07T13:38:06+02:00
routine-update: New upstream version

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3ed9d812 by Michael R. Crusoe at 2024-09-07T13:38:07+02:00
New upstream version 0.7.18
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92140cf3 by Michael R. Crusoe at 2024-09-07T13:38:07+02:00
Update upstream source from tag 'upstream/0.7.18'

Update to upstream version '0.7.18'
with Debian dir ac8401be07bd0eb1fd4fff0230cae015c9501ed3
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604046f1 by Michael R. Crusoe at 2024-09-07T13:38:07+02:00
routine-update: Standards-Version: 4.6.2

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a4ad6e54 by Michael R. Crusoe at 2024-09-07T13:38:12+02:00
Use secure URI in Homepage field.

Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html

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ee8aed6e by Michael R. Crusoe at 2024-09-07T13:57:38+02:00
Removed 2 patches applied upstream (CVE-2019-10269, gcc10). Removed no-longer-needed SIMDe patch.

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bea16f67 by Michael R. Crusoe at 2024-09-07T13:58:12+02:00
routine-update: Ready to upload to unstable

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30 changed files:

- + .github/workflows/ci.yaml
- − .travis.yml
- Makefile
- NEWS.md
- README.md
- bntseq.c
- bntseq.h
- bwa.1
- bwa.c
- bwa.h
- bwakit/bwa-postalt.js
- bwamem.c
- bwamem.h
- bwamem_extra.c
- bwamem_pair.c
- bwt.h
- bwtindex.c
- + code_of_conduct.md
- debian/changelog
- debian/control
- − debian/patches/CVE-2019-10269.patch
- − debian/patches/gcc10.patch
- debian/patches/series
- − debian/patches/simde
- debian/patches/spelling
- fastmap.c
- ksw.c
- main.c
- + neon_sse.h
- rle.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bwa/-/compare/e6cf97459718993e118dc3d800bb9c9bd2e80bc3...bea16f67f549279c57224fc98e30d7a803f65db8

-- 
View it on GitLab: https://salsa.debian.org/med-team/bwa/-/compare/e6cf97459718993e118dc3d800bb9c9bd2e80bc3...bea16f67f549279c57224fc98e30d7a803f65db8
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