[med-svn] [Git][med-team/bbmap][master] 3 commits: New upstream version 39.09+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / bbmap


Commits:
6c854f02 by Étienne Mollier at 2024-09-18T23:10:16+02:00
New upstream version 39.09+dfsg
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7c34d5cc by Étienne Mollier at 2024-09-18T23:10:24+02:00
Update upstream source from tag 'upstream/39.09+dfsg'

Update to upstream version '39.09+dfsg'
with Debian dir 6a4945f868a5b3b39f3dc44dc558523e25942b71
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e5840998 by Étienne Mollier at 2024-09-18T23:16:49+02:00
Ready for upload to unstable.

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30 changed files:

- README.md
- bloomfilter.sh
- + build.xml
- calcmem.sh
- cg2illumina.sh
- current/align2/AbstractMapper.java
- current/align2/BBMap.java
- current/align2/BBMap5.java
- current/align2/BBMapAcc.java
- current/align2/BBMapPacBio.java
- current/align2/BBMapPacBioSkimmer.java
- current/aligner/MicroAligner.java
- current/assemble/Tadpole.java
- current/barcode/BarcodeStats.java
- current/barcode/CountBarcodes2.java
- current/barcode/DemuxServer.java
- current/barcode/NovaDemux.java
- current/barcode/PCRMatrix.java
- current/barcode/prob/PCRMatrixProb.java → current/barcode/stub/PCRMatrixProb.java
- current/barcode/prob/PCRMatrixProbAbstract.java → current/barcode/stub/PCRMatrixProbAbstract.java
- current/barcode/prob/PCRMatrixTile.java → current/barcode/stub/PCRMatrixTile.java
- current/bloom/BloomFilter.java
- + current/bloom/PolyFilter.java
- current/driver/FilterReadsByName.java
- current/fileIO/FileFormat.java
- current/fileIO/ReadWrite.java
- current/hiseq/AnalyzeFlowCell.java
- current/hiseq/BGIHeaderParser.java
- current/hiseq/BGIHeaderParser2.java
- current/hiseq/FlowCell.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/cef006dd4452b31149ed9481cae8787f7d051592...e58409985fbc24875fcae3b1b8461642675e8778

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View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/cef006dd4452b31149ed9481cae8787f7d051592...e58409985fbc24875fcae3b1b8461642675e8778
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